Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00724 ATGGACAGATCAACTGGCCGTGGTGGTGGTGGTGGTGGAAGTGTGGACAAGTTTCTACCAAATTATAAGTTGGGAAAAACACTTGGCATTGGATCCTTTGGCAAGGTGAAAATTGCCGAGCATATACTGACTGGTCATAAAGTTGCTATAAAGATCCTTAACCGCCACAAGATAAGAAACATGGAAATGGAAGAAAAAGTTAGAAGGGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATACGACTTTATGAGGTCATAGAAACCCCAACGGACATATATGTTGTTATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTGGAGAAGGGTAGGCTGCAAGAGGACGAAGCCCGCCATTTTTTTCAGCAGATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACCTGAAGCCTGAGAATTTACTTTTGGAAAAATTTAATATCAAGATTGCTGATTTTGGCTTGAGCAATATCATGCGTGATGGTCACTTCCTTAAGACAAGTTGCGGAAGTCCTAACTATGCGGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTTTTCAAAAAAATAAAGGGTGGGATATACACTCTTCCCAGTCATCTATCACCTGGTGCTAGAGATTTGATACCGAGGATGCTCGTGGTAGATCCCATGAAGAGGATGACCATACTTGAGATACGTCAACACCCATGGTTCCAAGTTCGTCTGCCACGATATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAGATTGACGAGGAGATTCTTCAAAAAGTGGTTGAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGCAAACAGAATACAAAATAAGGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTCCGGGTGTCTACTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGGATTCTGGTTTCAATCGGATCCATTCTAGTGAAGTTGCTTCTCCAGTTGTTGGACACCACAGCACAGGGTATATGGATTACCAGGGAGTAGGAATGCGGCAACAGTTCCCTGCTGAGAGAAAATGGGCCCTAGGGCTTCAGTCTCGAGCACAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTAGCATTCCCGGTCATCATGAAGGAATGATTAACAATTCTGTGCATAGCAATCATTACTTTGGAAATGATTCCAGCATTATTGAAGATGACGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAGCTTTACAAAGCTCGTGAGGAGAAGTATCTACTTGATCTTCAAAGGGTCCAGGGCCCACAGTTTCTTTTCTTGGATCTCTGTGCTGCTTTCCTTTCACAGCTTCGTGTTCTCTAG 1551 0.4184 MDRSTGRGGGGGGSVDKFLPNYKLGKTLGIGSFGKVKIAEHILTGHKVAIKILNRHKIRNMEMEEKVRREIKILRLFMHHHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARHFFQQIISGVEYCHRNMVVHRDLKPENLLLEKFNIKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTILEIRQHPWFQVRLPRYLAVPPPDTLQQAKKIDEEILQKVVEMGFDRNQLVESLANRIQNKGTVTYYLLLDNRFRVSTGYLGAEFQETMDSGFNRIHSSEVASPVVGHHSTGYMDYQGVGMRQQFPAERKWALGLQSRAQPREIMTEVLKALQELNVCWKKIGHYNMKCRWVASIPGHHEGMINNSVHSNHYFGNDSSIIEDDAVSKSNVVKFEVQLYKAREEKYLLDLQRVQGPQFLFLDLCAAFLSQLRVL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00724 516 PANTHER SERINE/THREONINE KINASE 21 338 - -
Viun4g00724 516 Pfam UBA/TS-N domain 295 331 IPR015940 -
Viun4g00724 516 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 467 515 IPR001772 -
Viun4g00724 516 Pfam Kinase associated domain 1 473 515 IPR001772 -
Viun4g00724 516 ProSiteProfiles Protein kinase domain profile. 22 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00724 516 SUPERFAMILY Protein kinase-like (PK-like) 18 286 IPR011009 -
Viun4g00724 516 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Viun4g00724 516 Gene3D Kinase associated domain 1, KA1 397 514 - -
Viun4g00724 516 Pfam Protein kinase domain 22 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00724 516 SUPERFAMILY KA1-like 330 515 IPR028375 -
Viun4g00724 516 SMART uba_6 296 333 IPR015940 -
Viun4g00724 516 Gene3D Transferase(Phosphotransferase) domain 1 13 352 - -
Viun4g00724 516 CDD AMPKA_C 391 513 - -
Viun4g00724 516 FunFam Non-specific serine/threonine protein kinase 397 514 - -
Viun4g00724 516 FunFam Non-specific serine/threonine protein kinase 13 351 - -
Viun4g00724 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Viun4g00724 516 SMART serkin_6 22 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00724 516 CDD STKc_AMPK_alpha 19 273 - -
Viun4g00724 516 FunFam Non-specific serine/threonine protein kinase 13 103 - -
Viun4g00724 516 CDD UBA_SnRK1_plant 295 335 - -
Viun4g00724 516 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 294 334 IPR015940 -
Viun4g00724 516 SUPERFAMILY UBA-like 284 332 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00724 Viun-Chr4 5455248 5465268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00724 15 274 CBL-interacting serine-threonine protein kinases AT2G26980 50.379 1.15e-89 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Viun4g00724 Pkinase 1.8e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00724 K07198 - gmx:547544 984.171