Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00710 ATGCAGGAAAAAATGGTTCATGTTGGCTTTTTCCTTCTGGGGTGTCTCTCCATCATGATCTCATATGCTAATGGTTATGTCACCAATTGGGGTTGGAACAATGCACATGCCACATTCTACGGTGGAAGTGATGCTTCTGGGACAATGGGTGGAGCTTGTGGCTATGGAAACCTGTATAGCCAAGGGTATGGAACTGACACAGCAGCCCTTAGCACTGCACTGTTCAACAATGGCTTGAGTTGTGGCTCATGCTACCAAATCAAATGTGCAAATGACCCACAGTGGTGCCTCCCTGGCACCATTGTAGTCACTGCCACTAATTTCTGCCCCCCTGGTGGATGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTTTTTCAGCAAATTGCTCAGTACAAAGCTGGTGTTGTTCCTGTAGTTTACAGAAGGGTAAGGTGCAGAAGAAGGGGTGGAATCAGGTTCAGCATCAATGGTCATTCATACTTCAACTTAGTCCTTGTGACTAATGTTGGAGGGGCTGGTGATGTGCATTCTGTGGCCATCAAAGGTTCAAGGAATAGGTGGCAAGCCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAATTCCTACCTTAATGGACAGAGTCTCTCCTTTTTGGTCACCACAAGTGATGGCCGCAGTGTCCTCTCATACAATGCTGCACCACCAAGTTGGTCCTTTGGACAGACCTACACCGGAAGGCAATTCCGCTACTAA 747 0.4766 MQEKMVHVGFFLLGCLSIMISYANGYVTNWGWNNAHATFYGGSDASGTMGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGSCYQIKCANDPQWCLPGTIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGVVPVVYRRVRCRRRGGIRFSINGHSYFNLVLVTNVGGAGDVHSVAIKGSRNRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSVLSYNAAPPSWSFGQTYTGRQFRY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00710 248 FunFam Expansin 154 246 - -
Viun4g00710 248 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Viun4g00710 248 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Viun4g00710 248 SUPERFAMILY Barwin-like endoglucanases 31 172 IPR036908 -
Viun4g00710 248 Gene3D - 154 246 IPR036749 -
Viun4g00710 248 PANTHER EXPANSIN-A15 22 246 IPR002963 GO:0009664
Viun4g00710 248 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Viun4g00710 248 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Viun4g00710 248 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Viun4g00710 248 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Viun4g00710 248 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Viun4g00710 248 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Viun4g00710 248 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Viun4g00710 248 CDD DPBB_EXPA_N 31 137 - -
Viun4g00710 248 Gene3D - 18 150 IPR036908 -
Viun4g00710 248 FunFam Expansin 21 150 - -
Viun4g00710 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 154 IPR007112 -
Viun4g00710 248 SMART dpbb_1 67 144 IPR007112 -
Viun4g00710 248 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Viun4g00710 248 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Viun4g00710 248 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Viun4g00710 248 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Viun4g00710 248 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Viun4g00710 248 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Viun4g00710 248 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Viun4g00710 248 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Viun4g00710 248 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Viun4g00710 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Viun4g00710 248 Pfam Lytic transglycolase 67 144 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00710 Viun-Chr4 5248276 5249705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00710 4 247 Expansin Gene Family AT2G03090 76.587 1.74e-138 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00710 K20628 - gmx:100799370 476.478