Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00704 ATGGATGCAATGGAGAAGTATTATAGCCAGAGAGAGACAATGGCAGTGGCAGTGGCAGTGGCAGAGGAAGAAGCGTTTGATTTGCCACCAGGGTTCAGGTTCCACCCCACAGATGAAGAACTCATCACCCATTACCTCTCGCAGAAGGTTCTTGACAACTGCTTCTGCTCTAGGGCCATTGGAGAGGCTGATTTGAACAAGTGTGAGCCATGGGATTTGCCTTGTATGGCGAAAATGGGTGAAAAGGAGTGGTATTTTTTCTCTGTGAGGGACAGAAAATACCCAACTGGGCAAAGGACTAATAGAGCCACTGGTGCTGGTTACTGGAAGGCCACGGGCAAAGACAAAGAGATATACAAGGCAAAGACGCTTATTGGGATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCGAGTGGTGAAAAAACCAACTGGGTCATGCATGAATACAGATTAGAAGATGATCATTCTATGCACAATCCACACAAAAAGGCCATGAATGATTGGGCCATCTGCAGGATTTTTGAGAAGACAAACTGTGGGAAGAAAATGCAGATTTCTGGTTTGGTTCGGTTCGGTTCGTTCGGGAAGGACATGCCTTCACTGATGGATTCTTCTCCATTCAACAGCAGTGAAGCAAAAGCTGTTTTGGGGGAATCATCATCACATGATGAAAACATGGTTGAAAGCTTAGAAACTCTGATGATGGCTTCTTCATCTTCATATTCTTCAAACCCCTTTGATGTTTCCCCTGCCTCTTGGGGTGTGCCCCACCAATCACACTGCTCAAACCATTTCATGGATGAGGAACAGTCCATGGTGGGGATGGTGATGGAAAACCATGGATCAAGAACTCATAAAGACTTTGATGCTGACATGTCCTCTCTCATGTACAATGATGAAATGTTTCACAGATCATTGGGGAACCAGGAATATTCATCACCTTCTTTAGGACATGTGTATACTAGTGGCCTATGGGGATTCTAA 990 0.4485 MDAMEKYYSQRETMAVAVAVAEEEAFDLPPGFRFHPTDEELITHYLSQKVLDNCFCSRAIGEADLNKCEPWDLPCMAKMGEKEWYFFSVRDRKYPTGQRTNRATGAGYWKATGKDKEIYKAKTLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLEDDHSMHNPHKKAMNDWAICRIFEKTNCGKKMQISGLVRFGSFGKDMPSLMDSSPFNSSEAKAVLGESSSHDENMVESLETLMMASSSSYSSNPFDVSPASWGVPHQSHCSNHFMDEEQSMVGMVMENHGSRTHKDFDADMSSLMYNDEMFHRSLGNQEYSSPSLGHVYTSGLWGF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00704 329 Gene3D NAC domain 37 182 IPR036093 GO:0003677|GO:0006355
Viun4g00704 329 FunFam NAC domain-containing protein 100-like 37 182 - -
Viun4g00704 329 Pfam No apical meristem (NAM) protein 29 153 IPR003441 GO:0003677|GO:0006355
Viun4g00704 329 ProSiteProfiles NAC domain profile. 28 178 IPR003441 GO:0003677|GO:0006355
Viun4g00704 329 SUPERFAMILY NAC domain 25 178 IPR036093 GO:0003677|GO:0006355
Viun4g00704 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 27 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00704 Viun-Chr4 5131276 5132850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00704 27 329 NAC Transcription Factor Family AT5G07680 51.562 7.52e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun4g00704 NAM 2.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00704 - - vun:114181690 682.945