Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00701 ATGGGACGATCACCATGCTGCGACAAGGTAGGTTTAAAGAAAGGACCATGGACTCCAGAAGAAGATCAGAAGCTCTTGGCTTACATCGAAGAACATGGTCATGGAAGCTGGCGTGCCTTGCCAACAAAAGCTGGGCTTCAGAGGTGTGGCAAGAGCTGTAGACTGAGATGGACCAATTATCTCAGACCTGATATTAAGAGAGGCAAGTTCAGTCTGCAAGAAGAACAAACCATCATTCAACTCCATGCCCTCTTAGGAAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAACGAGATCAAGAACTACTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATCGACCCTGTCACACACAAGCCCAAAAACGATGCACTTCTCTCCAGTGACGGCCAATCCAAAACCGCTGCGAATCTCAGCCACATGGCTCAGTGGGAAAGTGCTCGTCTTGAAGCTGAAGCAAGACTAGTGAGAGAGTCAAAGCTACGTTCACATTCACTTCAGCAACAGATTGGAACTTCTTCCACGTTTGCATCATCATCTTCTGCATCCAATAAGGCAGAAGCACCGCCGCCGCCACCGTCGCGGTCCTCCCTCGACGTTCTCAAGGCTTGGAACAACGGGGGTTGGTTGAAGTCCAGTGAAGGGAGTGGCGCCATTGCAAGCACGGACCTTGAGTCTCCTACTTCTACGTTATCTTTCTCTGAGAATGCGCCACCGATTATGAATGGGATTGGAGGAGAGAATAATAATAATAGTAATAATAATAATAACAGCAACAATGATAACGCAATGCCTATGATCGAGTTTGTGGGAAGTTCGGGTAATTCTTCTTCTCTCGTGAAAGAAGAGGGTGAGCAAGAGTGGAAAGGTTATGATAGTTCTATCACCACTTTCAGTTCTGGTATGCATGAGTTCACAATGGCCATGGAGGGAACTTGGGTGCACGAGACTCTCAGAACTAATGGCTCGCACGATGACATTGTTGAAGAAGGCTTCACCAATCTTCTCCTTAAGACAAACTCGGAAGATCCGAGTTTGTCGTCGGAAGGTGGAGGAGAGTCTAACAATGGCGATGGTGGTAGTAACAGTCACAGTGATTTTTACGAAGATAACAACAACTATTGGAACAGCATCCTTAATTTAGTGAATTCATCTCCTTCTCATTCTCCTATGTTCTGA 1203 0.4622 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPTKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQQQIGTSSTFASSSSASNKAEAPPPPPSRSSLDVLKAWNNGGWLKSSEGSGAIASTDLESPTSTLSFSENAPPIMNGIGGENNNNSNNNNNSNNDNAMPMIEFVGSSGNSSSLVKEEGEQEWKGYDSSITTFSSGMHEFTMAMEGTWVHETLRTNGSHDDIVEEGFTNLLLKTNSEDPSLSSEGGGESNNGDGGSNSHSDFYEDNNNYWNSILNLVNSSPSHSPMF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00701 400 MobiDBLite consensus disorder prediction 228 270 - -
Viun4g00701 400 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 257 - -
Viun4g00701 400 CDD SANT 69 112 IPR001005 -
Viun4g00701 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun4g00701 400 MobiDBLite consensus disorder prediction 132 147 - -
Viun4g00701 400 Gene3D - 13 66 - -
Viun4g00701 400 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun4g00701 400 CDD SANT 16 61 IPR001005 -
Viun4g00701 400 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun4g00701 400 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun4g00701 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun4g00701 400 MobiDBLite consensus disorder prediction 168 208 - -
Viun4g00701 400 Gene3D - 69 116 - -
Viun4g00701 400 MobiDBLite consensus disorder prediction 122 147 - -
Viun4g00701 400 FunFam MYB transcription factor 69 116 - -
Viun4g00701 400 FunFam MYB-related transcription factor 13 66 - -
Viun4g00701 400 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun4g00701 400 MobiDBLite consensus disorder prediction 348 373 - -
Viun4g00701 400 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun4g00701 400 SMART sant 13 63 IPR001005 -
Viun4g00701 400 SMART sant 66 114 IPR001005 -
Viun4g00701 400 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00701 Viun-Chr4 5090021 5092748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00701 1 400 MYB Transcription Factor Family AT3G01140 56.608 2.93e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun4g00701 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00701 K09422 - gmx:100787446 642.499