Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00689 ATGGCTGCAATATCGTGTTCCTATGATGTGTTCCTCAGCTTCAGAGGCTCAGACACACGCCATGGTTTTGTTGGGAATCTTTACAAAGCCCTTGATGACAAGGGAATCCACACTTTCATTGATGATGAGAAGCTTCAGAGAGGAGAGGAAATAACACCTGCACTTATGAAGGCAATTGAAGAGTCTAGGATTGCCATCACTGTGCTCTCTCACAACTATGCTTCTTCATCATTTTGTTTAGATGAACTTGTTAATATCATTGCTTGTGCTAAGAAGAAAGGCTTGTTGGTTTTGCCTGTTTTTTATGACTTAAATCCTTCTGATGTAAGACACCAGAAAGGTAGTTTTGCAGAAGCTTTGGCAAGGCATGAGGAAAGGTTCAAAGACAAGAAGGAAAGTTTCAGCCATAACATGGATAGGTTGGAGAAATGGAAGATGGCTTTGCATCATGTGGCTAGCTTCTCTGGCTATCATTTCAAACAAGGATATGAATATGAATATGAGTTTATCAGAAGGATTGTTGAGTTTGTCTCTAGCAAGATAAATCGAACTCCTTTACATGTTGCGGATTACCCGGTTGGATTAGAGGCACAAATGGTAGAAGTTATGAAGCTTTTGGATGTTGGAAGTGAAGATGGTGTTCACATGGTTGGGATTCATGGAATTGGTGGGATAGGAAAAACAACACTTGCTCTTGCAATTTATAATATGGTTGTTGACCATTTTGATGGTCTGTGTTTTCTTGAAAACGTGAGAGAAAACTCAGACAGACATGGATTACAACATCTCCAAAGCATTCTTCTTGCAGAGTTGGTTAAAGAGAAGAGAATAAACATAGCAAGTGTGCAAGAAGGAATTTCAATGATACAACATAGGCTGCAACGAAAGAAGGTTCTTTTGATAGTCGATGATGTTGACAAGCATGAGCAGTTGCAGGCTATTGTTGGAAGATGTGAGTGGTTTGGTTCAGGTAGCAGAATCATGATAACGACTCGAGATGAACAAATTCTAGCATCTCATGAGGTTAAAAGAATGTATGAGGTGAAGGAATTGAACAAGAAGGATTCTCTTCAGTTGCTTACATGGAAAGCTTTTGGAACTGATGAAGCTGATCCAAGTTATAAGGAGGTCTTGAATCGTGTGGTAGCTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTATAGAAGAATGGAAATCTGCTATCAAACAATATGAAAGAATTCCTAATAACCAGATCCTGAAGATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATGAATTGGAAGAGGTTCAAGATATACTTCGTGCACATTATGGTGATTGCATGAAATATCATATTGGGGTGCTGGTTGATAAATCTCTCTTAAAGTTTAGTGTGCATGGTGTGATGGTGAAAATGCATGACTTAGTAGAGGACATGGGTAAAGAAATTGTACGAAAAGAGTCACCAAAAGATCCAGGCAAACGAAGCAGATTATGGTTGCATGAGGATATAATACAAGTTTTAGAAGACAACACAAAGTTCATGGGAATGAGATTTTTGAATTTGGACAAAAGCAAATCTTTAACACAGATACCTGATGTATCTGGTCTCCCAAATTTAGAGAAACTTTCATTTCAACATTGTCAGAATTTAACTGCAATTCACAATTCCATTGGCTTTCTGTGTAAACTCAAAATATTGAGTGCTTTTGGTTGCACCAAACTTGTGAGGTTTCCACCTATCAAGTTGTCTGCTCTTGAAAAGCTCAATCTCTCACGTTGTCACAGTCTTGAAAATTTTCCAGAAATATTAGGAAAGATGGAAAACATAAGGGTACTTCAGTTGGAGTACACTGCCATAAAAGAATTGCCATGTTCTTTTCAAAATTTTACACGACTTCAAGAGTTACAACTATCTAACTGTGGAGTTGTTCAACTACCAAGTAGCATTGCTGTGATGCCAGAACTTACTGATCTTATTGGTTGGAAATGGAAAGGGTGGCAATGGCTGAAAGAGGAAGAGGATGAAGAAAAACATGGATCATGTGTAGTTTCTTCAAATGTAGAATGTCTTTGGGCCTCAGAATGCAACCTGTGTGATGATTTCTTTTCAATCGGTTTCATGAGATTTGCTCATGTGAAAGACTTAGACTTGTCAAAGAACAATTTCACAGTCCTACCTGAATGCATCAAAGAGTTTCAATTTTTAAGGAAGCTCAAAGTGAGTGATTGCAAGCTTCTTCAGGAAATTAGAGGGATTCCACCAAGCTTGAAACATTTCTTAGCAAAAAATTGTAAATCCTTGACTTCCTCAAGTACAAGCATGTTCCTAAATCAGGAACTACATGAGGATGGAAAAACTGAGTTTTATTTACCAGGAGAAAGGGTTCCAGAATGGTTTGATCACAAAAGTAATGGACCTTCAATTTCTTTGTGGTTTCGTAATAGGTTTCCTGACAAGGTTGTTTGTCTTGTTATTGGAGCTGTGAATGACTCTGGAATGTTTAGGCCTATGGTAGTGATCAATGGCAATAAGAGTTTTGTTGGTAGTGGCTATTTCATGATGGGAATGGATCATACATATATTTTTGATCTTAAAACTATGGAGTTTGAAGATGACTTATATGGAGTTCCTTTAGAAAATGAATGGAACCATGCTGAAGTTAAATACATAGGTTTGGAAGAGACATCGATCCTTAAAGAAAGTGGAATTCATGTTTTCAAACAAGAAAGTGGCATGGAGGATATTTGGTTTTCTGATCCTTATGGCAAGAGAAAATTAGAAGATGATCTCAATAGTTTGGAATCACAGAACCAACAACTGCTAAAAAAGCATAGGTTTGTGGACATGGAAGCTTTGTAG 2922 0.3771 MAAISCSYDVFLSFRGSDTRHGFVGNLYKALDDKGIHTFIDDEKLQRGEEITPALMKAIEESRIAITVLSHNYASSSFCLDELVNIIACAKKKGLLVLPVFYDLNPSDVRHQKGSFAEALARHEERFKDKKESFSHNMDRLEKWKMALHHVASFSGYHFKQGYEYEYEFIRRIVEFVSSKINRTPLHVADYPVGLEAQMVEVMKLLDVGSEDGVHMVGIHGIGGIGKTTLALAIYNMVVDHFDGLCFLENVRENSDRHGLQHLQSILLAELVKEKRINIASVQEGISMIQHRLQRKKVLLIVDDVDKHEQLQAIVGRCEWFGSGSRIMITTRDEQILASHEVKRMYEVKELNKKDSLQLLTWKAFGTDEADPSYKEVLNRVVAYASGLPLALEVIGSNLFGKSIEEWKSAIKQYERIPNNQILKILKVSFDALEEEEKSVFLDIACCFKGYELEEVQDILRAHYGDCMKYHIGVLVDKSLLKFSVHGVMVKMHDLVEDMGKEIVRKESPKDPGKRSRLWLHEDIIQVLEDNTKFMGMRFLNLDKSKSLTQIPDVSGLPNLEKLSFQHCQNLTAIHNSIGFLCKLKILSAFGCTKLVRFPPIKLSALEKLNLSRCHSLENFPEILGKMENIRVLQLEYTAIKELPCSFQNFTRLQELQLSNCGVVQLPSSIAVMPELTDLIGWKWKGWQWLKEEEDEEKHGSCVVSSNVECLWASECNLCDDFFSIGFMRFAHVKDLDLSKNNFTVLPECIKEFQFLRKLKVSDCKLLQEIRGIPPSLKHFLAKNCKSLTSSSTSMFLNQELHEDGKTEFYLPGERVPEWFDHKSNGPSISLWFRNRFPDKVVCLVIGAVNDSGMFRPMVVINGNKSFVGSGYFMMGMDHTYIFDLKTMEFEDDLYGVPLENEWNHAEVKYIGLEETSILKESGIHVFKQESGMEDIWFSDPYGKRKLEDDLNSLESQNQQLLKKHRFVDMEAL 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00689 973 Pfam TIR domain 8 184 IPR000157 GO:0007165
Viun4g00689 973 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 183 - -
Viun4g00689 973 Pfam NB-ARC domain 197 420 IPR002182 GO:0043531
Viun4g00689 973 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 529 IPR044974 GO:0006952
Viun4g00689 973 Gene3D - 350 434 IPR042197 -
Viun4g00689 973 SUPERFAMILY L domain-like 492 794 - -
Viun4g00689 973 Gene3D - 6 179 IPR035897 -
Viun4g00689 973 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 157 IPR035897 -
Viun4g00689 973 Gene3D Ribonuclease Inhibitor 520 619 IPR032675 -
Viun4g00689 973 PRINTS Disease resistance protein signature 292 306 - -
Viun4g00689 973 PRINTS Disease resistance protein signature 216 231 - -
Viun4g00689 973 PRINTS Disease resistance protein signature 385 399 - -
Viun4g00689 973 PRINTS Disease resistance protein signature 601 617 - -
Viun4g00689 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 444 IPR027417 -
Viun4g00689 973 SMART till_3 7 154 IPR000157 GO:0007165
Viun4g00689 973 Gene3D - 180 345 IPR027417 -
Viun4g00689 973 Coils Coil 944 971 - -
Viun4g00689 973 ProSiteProfiles TIR domain profile. 6 181 IPR000157 GO:0007165
Viun4g00689 973 Gene3D Ribonuclease Inhibitor 620 803 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00689 Viun-Chr4 4910312 4914453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00689 531 679 WRKY Transcription Factor Family AT4G12020 37.086 7.32e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00689 - - gmx:100780257 1409.05