Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00687 ATGGAGATAATAACACCAACGCCACCACCAACAGCCGTCACTCCCACAAACGCCGCCCCCAAATCGCCGGAACTCGACATCGAGACTCCCACCCGGATCCACCAAGCCGCCGGAAACTCGAATCCCAGTCCAAAGCCGGTGTCTTTCTCCAACGGGGTCTTGAAGCGCCACCATGCAAACAACCGCGCCGCCGCCGCGGTGGTTTACAAGGAATGCTTGAAGAACCACGTCGCCAGCTTAGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCGTCGCCCGCGGCCACCGCCGACGACCCCAGCTCCATCAAATGCGCTGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCAGAGGAGCCGCCAATTTCTCCGGCGACGCATCATGTTCTGGAGTACCAGCCCCACCACCGTCACCACCCTCTCCCGCCACCGCCGCACCGGAGTCCGAACTCCTCCTCTCCGCCGCCGATCTCCTCCTACCCCTCCGCACCGCACATGCTCCTCGCCCTCTCCAGCGGCGGCGGCCTCTCCGTGGCCCCCGAGAACACCGCCGCGCCCGCTCCGCCGCACCACTCCCGGAAACGCTTCCGCACGAAATTCACCCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGACAAAGTGGGTTGGAAGATGCAGAAGCGCGACGAAAACATGGTTATGGAGTTTTGCAACGAGGTTGGCGTCGACAGAGGAGTCCTCAAAGTGTGGATGCACAACAACAAGAACACCTTGGCCAAAAAGGACAACCTCAATGCTACCTCTGCCAACGGGATTAACCATGTCGCCGCCGCAAACAAAGCTTCCGTTAATGGCCTTGAACATGAACACAGCGCCGGAATCAACGGTAACAACGACCACGACCACAACCTCGGTTCTTCTCACGATGTGAACGAGTACGAGAATGACAGTGGAACAAACGGTGGTGGAACAAATGGGTCTTCTTCTTCTTGA 987 0.6028 MEIITPTPPPTAVTPTNAAPKSPELDIETPTRIHQAAGNSNPSPKPVSFSNGVLKRHHANNRAAAAVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEEPPISPATHHVLEYQPHHRHHPLPPPPHRSPNSSSPPPISSYPSAPHMLLALSSGGGLSVAPENTAAPAPPHHSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDENMVMEFCNEVGVDRGVLKVWMHNNKNTLAKKDNLNATSANGINHVAAANKASVNGLEHEHSAGINGNNDHDHNLGSSHDVNEYENDSGTNGGGTNGSSSS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00687 328 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Viun4g00687 328 MobiDBLite consensus disorder prediction 285 328 - -
Viun4g00687 328 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
Viun4g00687 328 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Viun4g00687 328 MobiDBLite consensus disorder prediction 1 51 - -
Viun4g00687 328 MobiDBLite consensus disorder prediction 138 199 - -
Viun4g00687 328 SUPERFAMILY Homeodomain-like 187 258 IPR009057 -
Viun4g00687 328 MobiDBLite consensus disorder prediction 33 48 - -
Viun4g00687 328 Gene3D - 184 259 - -
Viun4g00687 328 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 256 - -
Viun4g00687 328 FunFam Zinc-finger homeodomain protein 2 185 258 - -
Viun4g00687 328 MobiDBLite consensus disorder prediction 308 328 - -
Viun4g00687 328 MobiDBLite consensus disorder prediction 148 165 - -
Viun4g00687 328 NCBIfam homeobox domain, ZF-HD class 197 254 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00687 Viun-Chr4 4851717 4853289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00687 1 253 ZF-HD Transcription Factor Family AT5G15210 51.724 1.06e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun4g00687 ZF-HD_dimer 9.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00687 - - gmx:100814730 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00687 4 4851717 4853289 Viun5g00583 5 3489642 3491162 PCT