Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00686 ATGAGGAAGCGGCAAGTGGTTGTGAGAAGAGAAGAGCCTCAGAGAAGTGTTAGGAGTGTGAAGTATGGTGAGTGCCAGAAGAATCATGCAGCAAATGTTGGAGGTTATGCTGTTGATGGTTGCAGAGAGTTCATGGCGAGTGGTGGAGAAGGAACAAGTGCTGCTCTCACTTGTGCTGCATGTGGCTGCCACAGGAACTTCCACAAGAGAATGGTGGAAACTGAAGTTGTGTGTGAGTGTTCCTCACCTCCCTCCATTGGCACATGA 267 0.4944 MRKRQVVVRREEPQRSVRSVKYGECQKNHAANVGGYAVDGCREFMASGGEGTSAALTCAACGCHRNFHKRMVETEVVCECSSPPSIGT 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00686 88 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
Viun4g00686 88 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 70 IPR006456 -
Viun4g00686 88 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 75 - -
Viun4g00686 88 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00686 Viun-Chr4 4804033 4804831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00686 1 87 Zinc finger-homeobox gene family AT3G28917 69.697 5.23e-42 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun4g00686 ZF-HD_dimer 8.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00686 - - aprc:113868039 166.007