Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00685 ATGGGAAGGCCACCTTGTTGTGATAAAGGTGTGAAGAAAGGGCCTTGGACTCCTGAAGAAGATATCATTTTGGTGTCTTACATACAGGACCATGGTCCTGGAAATTGGAAAGCTGTTCCCACCAATACTGGGTTGTCAAGGTGCAGCAAGAGTTGTAGACTTAGATGGACTAATTATCTGAGGCCAGGGATCAAAAGGGGTAACTTCACTGAACAGGAGGAGAAGATTATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCTATAGCTGCATACCTACCACAAAGAACAGATAATGACATCAAAAACTACTGGAACACATATCTGAAGAAAAAGCTGAACAAATTGGAAGCAAGTGGTTCTGAAGGAAGCATGGGGCATGTTGGGGTTTCAGTTTCTCAGTCAATGTCCAGAGGGCAGTGGGAAAGAAGGCTTCAAACGGATATTCACATGGCCAAGAAAGCTCTCAGTGAAGCTCTTTCACCGAAGAAAACATGTTCTAGTTCTACCTTTTTGGCTGAGTTAAACTCAAACATTTCCAATGATAACAGCACCACAAAACCAGCACAATCCATAAGCTATGCCTCGAGTGCTGACAACATAGCTCGTTTGTTGAAGGGGTGGATGAAGAACACACCAAAGCGTGCTAATACTCAAAACTCCTTCGTCAACAACTTGGCTGGTGCAGGAGCTGACACTGCTTCCAGTGAAGGAACAACAACAAAGGGAAGCACAAGCACAAATAATTCTTTGGAGTTGTCTGAGACTTTTGAGAGCTTGTTTGGTTATGAGTCTTTGGAGTCTTCAAATTCTGAGTTTTCGCCATCTCTTTCTCCTGAGGGAACTCTCTTCCAAGATGAGAGCAAGCCTGATATTACTGCCATAGACATGCCTTTCTCTTTGCTTGAGAAATGGCTTCTGGATGATTCTGGTGTTCAAGAGAAACTTGGCTTCTAG 963 0.4351 MGRPPCCDKGVKKGPWTPEEDIILVSYIQDHGPGNWKAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKIIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKLEASGSEGSMGHVGVSVSQSMSRGQWERRLQTDIHMAKKALSEALSPKKTCSSSTFLAELNSNISNDNSTTKPAQSISYASSADNIARLLKGWMKNTPKRANTQNSFVNNLAGAGADTASSEGTTTKGSTSTNNSLELSETFESLFGYESLESSNSEFSPSLSPEGTLFQDESKPDITAIDMPFSLLEKWLLDDSGVQEKLGF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00685 320 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Viun4g00685 320 MobiDBLite consensus disorder prediction 230 251 - -
Viun4g00685 320 Gene3D - 67 127 - -
Viun4g00685 320 CDD SANT 68 111 IPR001005 -
Viun4g00685 320 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Viun4g00685 320 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Viun4g00685 320 CDD SANT 15 60 IPR001005 -
Viun4g00685 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 244 - -
Viun4g00685 320 FunFam MYB-related transcription factor 12 65 - -
Viun4g00685 320 Gene3D - 12 65 - -
Viun4g00685 320 SMART sant 12 62 IPR001005 -
Viun4g00685 320 SMART sant 65 113 IPR001005 -
Viun4g00685 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Viun4g00685 320 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Viun4g00685 320 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Viun4g00685 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00685 Viun-Chr4 4764389 4766103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00685 1 311 MYB Transcription Factor Family AT5G62470 51.685 2.91e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun4g00685 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00685 K09422 - gmx:778078 479.174