Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00681 ATGGAGGAGAGGAATGAGATGGAAAAGATTGATGATGTTATGCCAGGATTTCGTTTTCACCCCACTGATGAAGAGCTTGTTGATTTCTATCTCAAGAGAAAAATTCAGCAGAAGTCTCTCCCTATTGAACTGATTAAGCAAGTGGATATTTACAAACATGATCCATGGGACCTTCCAAAGCTTGCAGGCACAGGGGAGAAAGAGTGGTACTTCTATTGTCCAAGGGACAGAAAATACAGGAATAGTGCACGGCCAAATAGGGTGACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGACAGACCTATATATTCCTCTGAAGGAAAGTGCATTGGTCTGAAGAAGTCTCTTGTGTTCTACCGAGGAAGAGCTGCCAAAGGAATGAAAACTGATTGGATGATGCATGAGTTTAGGCTTCCTTGCATCTCTGACTCTTCCCCTTCCAAAAAACTCTCAGACAAAACCCTCCCTCCAACTGATTCATGGGCAATCTGTAGGATATTCAAGAAAACCAACTCCATTTCCATGGCACAGAAAGCTTTATCACACCCTTGGATCTCTCAGTTATCTGGAAGCATGGTATCAGACATGTTCACACAGGGTGCAGCAACAAACCATCATCTAGGATCACCAGCCATTCAATTTTGTGAAGATAAGCAAGAGTTAAACCAAGTCTCCAACAATGAAATCAACACCAACTTCACAGCTTCAGATATTCCCAGTTACAAACCCATCGACAGCATCACAGTTCCCAAGCCTTCACCACAAATTCCTGTTTCAGATGATTTCATATTCTACACAGAACATACCAAGTGCACACTTGATGCCAGTTCCATGCTTTCTCCCAACCCTGACTACATAACATTTGAAGAGCCAAACCAGCAACAGTATAGTGGCTTCTCGACCAATCTACCTCACTTCATCCAACAACAAAACATGAGCACAGAAACAGTAACAAAGGAACAACAAGATTGGGAAACAATTGGGAGAACCACTGGTTTTCCCTTTACTTTGCTTCCCCCATATGATTCATGGAAGTCTTCTTCTGTGGTTTGGGAGTCACCTTCTTGCCCCAGTGACATCTCCACTACCTATTCCACCAGTAAATGCTACACTTGA 1119 0.4316 MEERNEMEKIDDVMPGFRFHPTDEELVDFYLKRKIQQKSLPIELIKQVDIYKHDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISDSSPSKKLSDKTLPPTDSWAICRIFKKTNSISMAQKALSHPWISQLSGSMVSDMFTQGAATNHHLGSPAIQFCEDKQELNQVSNNEINTNFTASDIPSYKPIDSITVPKPSPQIPVSDDFIFYTEHTKCTLDASSMLSPNPDYITFEEPNQQQYSGFSTNLPHFIQQQNMSTETVTKEQQDWETIGRTTGFPFTLLPPYDSWKSSSVVWESPSCPSDISTTYSTSKCYT 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00681 372 Gene3D NAC domain 22 175 IPR036093 GO:0003677|GO:0006355
Viun4g00681 372 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Viun4g00681 372 SUPERFAMILY NAC domain 11 170 IPR036093 GO:0003677|GO:0006355
Viun4g00681 372 ProSiteProfiles NAC domain profile. 13 170 IPR003441 GO:0003677|GO:0006355
Viun4g00681 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 268 - -
Viun4g00681 372 FunFam NAC domain-containing protein 35 22 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00681 Viun-Chr4 4725703 4729259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00681 2 186 NAC Transcription Factor Family AT5G39820 68.500 5.93e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun4g00681 NAM 2.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00681 - - gmx:100777630 608.216