Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00669 ATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGATCATGACCACCACCAACTCCACCTACGCTCCACCTCTTCCTCCCTCAACGCCTTCCCCTCTTTCCCACCCCATCACTTTCAAGGCGGTGGTGCAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGATGATGGATCTCAGCTAGGGGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCTCTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCAAAGGCTTTGGGCCTTCAACCGAGGCAAATCGCTATATGGTTCCAGAATAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTTCTCAAGAAGCAGTTTGAAGCTGTGAAAGCTGATAATGATTCACTCAAAGCTCAGAATCAGAAACTACATGCAGAGCTACAAAGTCTGAAAAATAGGGAGTGCTGTGAAACCGGAACAGTAGTTAGTCAGAAGAAAGACACTGAGGGTTCTTGGAGCAATGGAAGCAACAACAGTTCAGAAATCAACTTGGACCTCTCAAGAACACCAGTGATGAACAGTCCTGTGTCTTCTCAGAATGGAAAAAGCCTCATACCAAGTTCCCACAACAAGCCAACAAGCATGACTCAACTCCTTCAATGCTCATCAAGATCAGATCTTCAAGATGAGAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGACCGAGCAGCAGCACCAGTTTCATTAA 852 0.4718 MAFPPSHTFMFQTHEDHDHHQLHLRSTSSSLNAFPSFPPHHFQGGGAGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAELQSLKNRECCETGTVVSQKKDTEGSWSNGSNNSSEINLDLSRTPVMNSPVSSQNGKSLIPSSHNKPTSMTQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWTEQQHQFH 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00669 283 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Viun4g00669 283 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Viun4g00669 283 MobiDBLite consensus disorder prediction 219 248 - -
Viun4g00669 283 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
Viun4g00669 283 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Viun4g00669 283 SMART HOX_1 83 144 IPR001356 GO:0003677
Viun4g00669 283 Gene3D - 77 157 - -
Viun4g00669 283 Pfam Homeodomain 85 138 IPR001356 GO:0003677
Viun4g00669 283 Pfam Homeobox associated leucine zipper 140 180 IPR003106 GO:0006355|GO:0043565
Viun4g00669 283 SUPERFAMILY Homeodomain-like 76 142 IPR009057 -
Viun4g00669 283 Coils Coil 132 180 - -
Viun4g00669 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 275 IPR045224 GO:0003700
Viun4g00669 283 FunFam Homeobox-leucine zipper protein ATHB-13 77 144 - -
Viun4g00669 283 CDD homeodomain 85 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00669 Viun-Chr4 4552992 4556009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00669 1 277 Homeobox Transcription Factor Family AT3G01220 51.370 1.05e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun4g00669 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00669 K09338 - gmx:100790803 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00669 4 4552992 4556009 Viun5g00594 5 3611442 3613663 PCT