Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00668 ATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGATCATGACCACCACCAACTCCACCTACGCTCCACCTCTTCCTCCCTCAACGCCTTCCCCTCTTTCCCACCCCATCACTTTCAAGGCGGTGGTGCAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGATGATGGATCTCAGCTAGGGGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCTCTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCAAAGGCTTTGGGCCTTCAACCGAGGCAAATCGCTATATGGTTCCAGAATAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTTCTCAAGAAGCAGTTTGAAGCTGTGAAAGCTGATAATGATTCACTCAAAGCTCAGAATCAGAAACTACATGCAGAGTGTGACAGTGTCAGAACTGAGAGCTGCGAATTAACACTACAAAGTCTGAAAAATAGGGAGTGCTGTGAAACCGGAACAGTAGTTAGTCAGAAGAAAGACACTGAGGGTTCTTGGAGCAATGGAAGCAACAACAGTTCAGAAATCAACTTGGACCTCTCAAGAACACCAGTGATGAACAGTCCTGTGTCTTCTCAGAATGGAAAAAGCCTCATACCAAGTTCCCACAACAAGCCAACAAGCATGACTCAACTCCTTCAATGCTCATCAAGATCAGATCTTCAAGATGAGAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGACCGAGCAGCAGCACCAGTTTCATTAA 888 0.4707 MAFPPSHTFMFQTHEDHDHHQLHLRSTSSSLNAFPSFPPHHFQGGGAGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAECDSVRTESCELTLQSLKNRECCETGTVVSQKKDTEGSWSNGSNNSSEINLDLSRTPVMNSPVSSQNGKSLIPSSHNKPTSMTQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWTEQQHQFH 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00668 295 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Viun4g00668 295 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Viun4g00668 295 SMART HOX_1 83 144 IPR001356 GO:0003677
Viun4g00668 295 Pfam Homeodomain 85 138 IPR001356 GO:0003677
Viun4g00668 295 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Viun4g00668 295 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
Viun4g00668 295 Pfam Homeobox associated leucine zipper 140 177 IPR003106 GO:0006355|GO:0043565
Viun4g00668 295 Coils Coil 132 180 - -
Viun4g00668 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 287 IPR045224 GO:0003700
Viun4g00668 295 MobiDBLite consensus disorder prediction 231 259 - -
Viun4g00668 295 SUPERFAMILY Homeodomain-like 76 142 IPR009057 -
Viun4g00668 295 CDD homeodomain 85 141 IPR001356 GO:0003677
Viun4g00668 295 Gene3D - 77 155 - -
Viun4g00668 295 FunFam Homeobox-leucine zipper protein ATHB-13 77 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00668 Viun-Chr4 4552992 4556011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00668 1 289 Homeobox Transcription Factor Family AT3G01220 49.342 4.62e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun4g00668 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00668 K09338 - gmx:100790803 474.552