Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00667 ATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGATCATGACCACCACCAACTCCACCTACGCTCCACCTCTTCCTCCCTCAACGCCTTCCCCTCTTTCCCACCCCATCACTTTCAAGGCGGTGGTGCAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGATGATGGATCTCAGCTAGGGGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCTCTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCAAAGGCTTTGGGCCTTCAACCGAGGCAAATCGCTATATGGTTCCAGAATAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTTCTCAAGAAGCAGTTTGAAGCTGTGAAAGCTGATAATGATTCACTCAAAGCTCAGAATCAGAAACTACATGCAGAGTTGATCATTCTCGGGAGGTGTCAGTGTGACAGTGTCAGAACTGAGAGCTGCGAATTAACACTACAAAGTCTGAAAAATAGGGAGTGCTGTGAAACCGGAACAGTAGTTAGTCAGAAGAAAGACACTGAGGGTTCTTGGAGCAATGGAAGCAACAACAGTTCAGAAATCAACTTGGACCTCTCAAGAACACCAGTGATGAACAGTCCTGTGTCTTCTCAGAATGGAAAAAGCCTCATACCAAGTTCCCACAACAAGCCAACAAGCATGACTCAACTCCTTCAATGCTCATCAAGATCAGATCTTCAAGATGAGAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGACCGAGCAGCAGCACCAGTTTCATTAA 912 0.4715 MAFPPSHTFMFQTHEDHDHHQLHLRSTSSSLNAFPSFPPHHFQGGGAGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAELIILGRCQCDSVRTESCELTLQSLKNRECCETGTVVSQKKDTEGSWSNGSNNSSEINLDLSRTPVMNSPVSSQNGKSLIPSSHNKPTSMTQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWTEQQHQFH 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00667 303 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Viun4g00667 303 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Viun4g00667 303 Pfam Homeodomain 85 138 IPR001356 GO:0003677
Viun4g00667 303 SMART HOX_1 83 144 IPR001356 GO:0003677
Viun4g00667 303 SUPERFAMILY Homeodomain-like 76 142 IPR009057 -
Viun4g00667 303 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Viun4g00667 303 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
Viun4g00667 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 295 IPR045224 GO:0003700
Viun4g00667 303 Pfam Homeobox associated leucine zipper 140 176 IPR003106 GO:0006355|GO:0043565
Viun4g00667 303 MobiDBLite consensus disorder prediction 239 267 - -
Viun4g00667 303 FunFam Homeobox-leucine zipper protein ATHB-13 77 144 - -
Viun4g00667 303 Gene3D - 77 155 - -
Viun4g00667 303 CDD homeodomain 85 141 IPR001356 GO:0003677
Viun4g00667 303 Coils Coil 132 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00667 Viun-Chr4 4552992 4556012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00667 1 297 Homeobox Transcription Factor Family AT3G01220 48.077 3.35e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun4g00667 Homeodomain 1.4e-15 CL0123