Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00666 ATGGGAAGCATTGATTGTATTAGGGTTGATTCTTCAATTGGGGGCAAAACCAAGAGAGGAAGAAACAACAAAGATGTTGTTCATGGTAGTACTGAAGAAGGTTCAAGATTTTGGAAGAAATTGAGGATTTTCCTGGGTTGCATGCTTTGGAGTTCTAAAGGGGAAGCTTCTTCAAACAAAATCAATCAAATTCATGGAAAACATGTTACAAATGATGTTGAGAGACAAGAACCAATTGTCCCAAGATCCTCATCAAACAGAAGGTTACTTAGGCATGCAACAAGACTGTGTGTTCCGAATCAAGAACTGTTTGAAGCTTCTTTGCTTCTTCGAAGGTTCAGTTTTCAAGATCTTATGTTGGCAACACGAACTTTTAAGGTTGAGAATTTTCATGACGAGGAAGGGTTTGGGATTTTGTTGAAGGGTTGGATTAATCAATATGGGAACTATGCAGCAAGGCCTGGAAAAGGGATTCCCATTGCAGTCAAGGCACTCAACTTAAATGAATCTCAAGATCAAAAAGAATGGCTTGATGAAATTAGTTATCTCAGTGAACTCAATCATCTAAATCTGGTTAAAATAGTAGGGTTTTGCATTGAGGATGGCAAAAGACTACTAGTACATGAGTATATGTGTCAAGGAAGCTTAGAGAAGCATCTATTCAGCAGAACTCTTCGACTTACATGGCCTATGAGGATGAAAATTGCAATTGGTGCTGCCAATGGCCTTGCATTTTTACAAGAGGAAGCTTCAAGGCCAATAATATTTCCAGATTTTAAGACATCTAAGATCCTATTGGATATGGACTACAACGCAAAACTTTGGGACTTTGGTCTAGCTAGAGAAATTCATGCACCAACTAAAGTAGTAGTAACAAAAGGTTATGAAGCCCCTGAGTATGTCATGAAAGGACACATCACTTCTGAAAGCAATGTTTATAGCTTTGGGATTGTTCTGCTTGAAATACTGACAGGAAGAAGAGCCATGGATGAAACAATGCCTGTAGAGGAACAAAACCTGATAGAATGGTTGCGACCTCATTTGAGAAACAAAGCAAATTTTCATTATTTGATGGATCCTAGACTTGAAGGACAATACCCTACAAAGTGTGCTCATAGGACAATGAGAATAGCTACTCATTGTCTTCGCCTAGACCCTAAAGCAAGACCCCTTATGAGTGAAATAGTTCACAAGTTGAAGTATCTACATGATGAGATGGTTGGTGAGGTTGGTCCCAAAAAAAACTCACATGGTGTACGCCCTTCCAACCATGCTAGTGCTAACAGGTGTGCCCCTGGAAGAGGTTCATCACCAAAAGTTTTAAGGTGCTTTCAAGGTTCACCACAGTGCCAATACTACCCTCTTCCTCTACCTCCAACTCCAGCAAATCCTTGGATTGCATCTTCATCTAAATCTTAG 1419 0.3968 MGSIDCIRVDSSIGGKTKRGRNNKDVVHGSTEEGSRFWKKLRIFLGCMLWSSKGEASSNKINQIHGKHVTNDVERQEPIVPRSSSNRRLLRHATRLCVPNQELFEASLLLRRFSFQDLMLATRTFKVENFHDEEGFGILLKGWINQYGNYAARPGKGIPIAVKALNLNESQDQKEWLDEISYLSELNHLNLVKIVGFCIEDGKRLLVHEYMCQGSLEKHLFSRTLRLTWPMRMKIAIGAANGLAFLQEEASRPIIFPDFKTSKILLDMDYNAKLWDFGLAREIHAPTKVVVTKGYEAPEYVMKGHITSESNVYSFGIVLLEILTGRRAMDETMPVEEQNLIEWLRPHLRNKANFHYLMDPRLEGQYPTKCAHRTMRIATHCLRLDPKARPLMSEIVHKLKYLHDEMVGEVGPKKNSHGVRPSNHASANRCAPGRGSSPKVLRCFQGSPQCQYYPLPLPPTPANPWIASSSKS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00666 472 MobiDBLite consensus disorder prediction 412 435 - -
Viun4g00666 472 PANTHER OS01G0588500 PROTEIN-RELATED 85 402 - -
Viun4g00666 472 Pfam Protein tyrosine and serine/threonine kinase 136 399 IPR001245 GO:0004672|GO:0006468
Viun4g00666 472 Gene3D Phosphorylase Kinase; domain 1 100 210 - -
Viun4g00666 472 Gene3D Transferase(Phosphotransferase) domain 1 211 417 - -
Viun4g00666 472 ProSiteProfiles Protein kinase domain profile. 125 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g00666 472 SUPERFAMILY Protein kinase-like (PK-like) 104 403 IPR011009 -
Viun4g00666 472 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 211 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00666 Viun-Chr4 4514185 4526793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00666 107 426 Glycoside Hydrolase AT3G07070 40.426 2.14e-79 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun4g00666 PK_Tyr_Ser-Thr 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00666 - - var:108344548 719.924