Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00647 ATGGGAGGAAGTGCTGCAAAGGTTGTCTTCACGCTGCTGGTAACTTTGGCCATCATCATCCCATGCCTTGAGGCTGGCATTGCTGAATACGACGACTTTCTGAAAAATCAAGCTGAGGAAGCCCACACAATCGCTCTCGAGTCCTATGTGCCGACTCCGGAATTCGTGGCCAGTGAGCTCAATTACCATGTTCATCTTGCCATGCAAAACAGCACCAGGAGGGGACTGAGGGCGCCCAGGAACCCTGCTTTTGGGCCATGTGACAGCACCAACCCCATTGACAATTGCTGGAGGTGCAACAAAGACTGGGCCAACGACAGGTACCAGTTGGCCAAATGCGGAAAAGGGTTCGGAAGACGCGCAGTGGGAGGCCTCGGTGGACCCATTTATGTTGTCAATGATACCTCCGACGACGACATGCAGAACCCTAAGCCAGGAACCATCCGTCATGCTGTCACCCAACAGGGTCCACTTTGGATCACCTTCTCACGCAGCATGAGAATCACTCTGCAGCAGGAGCTTATGATTTCCTCCGACAAGACCATCGACGGTCGTGGCGCCAACGTTCAGTTCAAGGACGGTGGTGGCCTCACCATGCAGTTCGTGAACAACATCATCATCCACGGCATTCGCGTGAAGAACATCGTGCCTAAGGATGGTGGCATGATCAGGGACTCTTACAACCACGTTGGACACAGAACCAGGAGTGATGGTGATGCCATCTCCATCTTCGGAGCTTCCAACATTTGGATCGATCATGTTTCCCTCTCTAACTCTGCCGATGGACTCATCGATGTGATCGAGGGATCCACTGCCATCACCGTCTCCAACTGCCACATGACGAGACACAACGATGTGATGTTGTTTGGTGCCAGTGACACAAACCCCCACGTCAATGACAAGCTCATGCAGATAACGGTGGCATTCAACCACTTCGGGCAGGGACTGTCCCAGAGGATGCCAAGGTGCAGATTTGGATTCTTCCACGTTCTTAACAACGATTACACTCACTGGCAAATTTACGCCATTGGTGGAAGCTCAAAGCCAACTATTCTTAGCCAGGGAAACCGTTTCATTGCTCCCAACCTCGATTTTGCAAAGGAAATCACACACAGAGACTACGCTACACCTGAACAATGGATGCAATGGCAGTGGCAATCAGACATGGACCTTCTCATGAACGGTGCCACTTTCAACACCACAGGTGCTCCCATCCAGATGACATACAAGAAGGGTCTCATCATGAAGCCAAGGGATGGCACCCATGTCAGCAGGCTCACACGCCATGCTGGTGCTCTCAACTGCTATGCTGGCTTTCCTTGCTAG 1326 0.5196 MGGSAAKVVFTLLVTLAIIIPCLEAGIAEYDDFLKNQAEEAHTIALESYVPTPEFVASELNYHVHLAMQNSTRRGLRAPRNPAFGPCDSTNPIDNCWRCNKDWANDRYQLAKCGKGFGRRAVGGLGGPIYVVNDTSDDDMQNPKPGTIRHAVTQQGPLWITFSRSMRITLQQELMISSDKTIDGRGANVQFKDGGGLTMQFVNNIIIHGIRVKNIVPKDGGMIRDSYNHVGHRTRSDGDAISIFGASNIWIDHVSLSNSADGLIDVIEGSTAITVSNCHMTRHNDVMLFGASDTNPHVNDKLMQITVAFNHFGQGLSQRMPRCRFGFFHVLNNDYTHWQIYAIGGSSKPTILSQGNRFIAPNLDFAKEITHRDYATPEQWMQWQWQSDMDLLMNGATFNTTGAPIQMTYKKGLIMKPRDGTHVSRLTRHAGALNCYAGFPC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00647 441 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Viun4g00647 441 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Viun4g00647 441 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Viun4g00647 441 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Viun4g00647 441 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Viun4g00647 441 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Viun4g00647 441 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Viun4g00647 441 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Viun4g00647 441 SMART amb_all 165 364 IPR002022 -
Viun4g00647 441 SUPERFAMILY Pectin lyase-like 91 432 IPR011050 -
Viun4g00647 441 Gene3D - 90 434 IPR012334 -
Viun4g00647 441 Pfam Pectate lyase 173 358 IPR002022 -
Viun4g00647 441 PANTHER PECTATE LYASE 18-RELATED 43 438 IPR045032 GO:0030570
Viun4g00647 441 Pfam Pectate lyase, N terminus 27 76 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00647 Viun-Chr4 4355222 4356856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00647 9 441 Polysaccharide Lyase AT1G14420 54.889 5.48e-175 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00647 K01728 - gmx:100810615 708.753