Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00640 ATGGCTGACAAGGAAGAAGCCATGCATGCTGTTTTGAAGGAAGCTGTGGATTTGGAAAACGTCCCACTTGAAGAGGTTTTTCAGACTCTGAGGTGTGATTCAAATGGACTCACAACAAAATCTGCTGAGGAGAGGTTGGCCATTTTTGGCCACAACAAACTTGAGGAGAAACAGGAGAGCAAGGTTTTGAAGTTTTTGGGATTTATGTGGAATCCTCTTTCATGGGTCATGGAAGCTGCAGCAATCATGGCCATTGCTTTGGCCAATGGAGGAGGCAAACCTCCTGATTGGCAAGACTTCGTTGGGATTATCACACTCCTTATTATCAATTCAACAATAAGTTTCATCGAGGAGAACAATGCTGGTAATGCTGCAGCAGCTTTGATGGCTCGTCTGGCACCTAAAGCAAAGGTCCTTCGGGATGGGAAATGGATTGAGGAGGATGCTAGTGTTCTTGTTCCAGGGGATATAGTTAGTGTTAAGCTAGGTGATATTATCCCTGCGGATGCTCGTTTACTTGAAGGTGATCCGTTGAAGATTGATCAGTCTGCACTTACTGGTGAATCTCTTCCTGTCACAAAAGGCCCTGGTGATAGTGTTTATTCAGGTTCCACATGCAAGCAGGGAGAGATAAATGCAGTTGTTATAGCCACGGGAGTTCATACCTTCTTTGGCAAAGCTGCTCACCTTGTGGACTCCACAAATCAAGTTGGTCATTTTCAGAAGGTTCTGACTGCTATTGGGAACTTCTGCATATGTTCCATTGCTGTGGGAATGATAATAGAGATCATTGTCATGTACCCAATTCAACACCGACAATATCGACCTGGGATTGACAATCTGCTTGTGCTTCTCATCGGAGGAATTCCTATAGCCATGCCTACTGTTTTGTCAGTGACAATGGCTATTGGATCCCATCGCTTAGCTCAACAGGGTGCTATTACTAAAAGAATGACAGCCATAGAAGAGATGGCAGGAATGGATGTATTATGTAGTGACAAAACTGGAACTTTGACTTTGAATAAACTGTCAGTTGACAAGAATCTTATTGAGATTTTTGCTAAAGGAGTTGATGTAGATACAGTAGTTCTCATGGCTGCTCGGGCTGCAAGATTGGAAAACCAAGATGCTATAGATGCTGCTGTTGTAGGGATGTTAGGTGATCCAAAAGAGGCAAGGGCTGGTATTCAAGAGGTTCACTTCCTTCCCTTCAATCCAACTGACAAAAGGACTGCCATGACTTATGTAGACAGTGAAGGTAAAATGCATCGCGTCAGCAAAGGCGCACCAGAGCAGATTTTGAATCTTTCACACAATAAGTCAGAGATAGAACGCAGAGTTCATTCTGTCATTGATAAGTTTGCAGAGCGTGGCTTACGGTCTCTTGCAGTGGCTTACCAGGAAGTTCCTGATGGGGTAAAAGAAAGCCAAGGAGGGCCTTGGCAATTTATTGGACTCTTGCCTCTGTTTGACCCCCCTAGACATGATAGTGCCGAGACAATAAGAAGGGCATTAAACCTTGGAGTAAATGTTAAAATGATAACAGGTGATCAACTAGCAATAGGAAAAGAAACAGGTCGCCGTCTGGGAATGGGAACCAACATGTACCCTTCATCGGCTTTATTGGGCCAAAACAAGGATGAATCAATTGCTACCTTGCCAGTTGATGATTTGATTGAAAAAGCAGATGGATTTGCTGGTGTTTTTCCTGGTATAATAACACCATTGTTTTCTGATGGTTTACTTTTATATGATATCATTTTCTTTTATTTCTTTGACTTAACGAGTTCATCTAATACAGAACACAAATATGAGATTGTGAAACGTTTACAAGCTAGAAAACACATATGTGGGATGACTGGTGATGGGGTTAATGATGCTCCTGCTCTTAAAAAGGCAGACATTGGCATAGCTGTTGCTGATGCTACTGATGCAGCTCGCAGTGCTTCTGACATTGTTCTAACTGAACCTGGTCTCAGTGTTATCATCAGTGCGGTATTGACTAGTCGAGCCATATTCCAAAGGATGAAGAATTACACGATCTACGCAGTTTCCATCACAATTCGTATTGTGCTTGGTTTCATGTTACTGGCCCTCATATGGCAATTTGATTTTCCACCATTCATGGTGCTGATTATTGCTATTCTTAATGATGGTACCATTATGACAATATCAAAGGACAGGGTAAAACCATCTCCATATCCAGATAGCTGGAAGTTGGCAGAGATCTTTACCACTGGAATAATTCTTGGTGGTTATTTGGCTATGATGACAGTTATTTTCTTTTGGGCAGCATATAAAACAGATTTTTTCCCTCAAACTTTTGGAGTTGCAAGCCTTCAGAAAAAGGACAGGGATGACTATAGAAAGCTTGCCTCTGCAATATACCTGCAAGTTAGCACAATTAGTCAGGCTCTCATATTCGTTACACGAGCAAGAAGTTGGTCTTACGTTGAACGTCCTGGTTTGTTACTAGTAGCAGCTTTTGTTGTCGCCCAGCTAATAGCTACATTGATCGCAGTTTATGCAAATTGGAGTTTTGCTGCGATTGAAGGGATTGGATGGGGTTGGGCCGGTGTTGTTTGGCTTTACAACCTTGTCTTTTACATGCCACTTGACTTTATCAAGTTCATAATTCGGTATGCCTTGAGTGGAAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCTTTTACAAGGAAAAAGAATTTTGGAAGAGAGGAACGTGAACTTAAATGGGCACATGCACAGAGAACACTCCATGGCCTTCATCCACCAGAGACTAAGATGTTTGGTGAACGAACAACTTACACAGAACTCAATCATATGGCTGAAGAAGCTAAAAGACGAGCAGAGATTGCCAGACTGAGAGAACTGCATACATTGAAGGGCCATGTTGAGTCTGTGGTTAGACTGAAAGGCCTCGACATTGATACAATACAGCAATCATACACTGTCTAG 2961 0.4235 MADKEEAMHAVLKEAVDLENVPLEEVFQTLRCDSNGLTTKSAEERLAIFGHNKLEEKQESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWIEEDASVLVPGDIVSVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEINAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIEIIVMYPIQHRQYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEIFAKGVDVDTVVLMAARAARLENQDAIDAAVVGMLGDPKEARAGIQEVHFLPFNPTDKRTAMTYVDSEGKMHRVSKGAPEQILNLSHNKSEIERRVHSVIDKFAERGLRSLAVAYQEVPDGVKESQGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESIATLPVDDLIEKADGFAGVFPGIITPLFSDGLLLYDIIFFYFFDLTSSSNTEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTDFFPQTFGVASLQKKDRDDYRKLASAIYLQVSTISQALIFVTRARSWSYVERPGLLLVAAFVVAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLVFYMPLDFIKFIIRYALSGRAWDLVIEQRIAFTRKKNFGREERELKWAHAQRTLHGLHPPETKMFGERTTYTELNHMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQSYTV 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00640 986 FunFam Plasma membrane ATPase 343 490 - -
Viun4g00640 986 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Viun4g00640 986 Pfam haloacid dehalogenase-like hydrolase 327 634 - -
Viun4g00640 986 NCBIfam HAD-IC family P-type ATPase 599 709 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun4g00640 986 NCBIfam HAD-IC family P-type ATPase 103 351 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun4g00640 986 SFLD p-type atpase 313 671 IPR044492 -
Viun4g00640 986 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Viun4g00640 986 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Viun4g00640 986 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Viun4g00640 986 PRINTS P-type cation-transporting ATPase superfamily signature 643 655 - -
Viun4g00640 986 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Viun4g00640 986 PRINTS P-type cation-transporting ATPase superfamily signature 620 639 - -
Viun4g00640 986 Gene3D - 935 986 - -
Viun4g00640 986 SUPERFAMILY HAD-like 324 674 IPR036412 -
Viun4g00640 986 FunFam Plasma membrane ATPase 134 218 - -
Viun4g00640 986 FunFam ATPase 2, plasma membrane-type 484 576 - -
Viun4g00640 986 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 570 IPR006534 GO:0008553|GO:0016020|GO:0120029
Viun4g00640 986 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Viun4g00640 986 CDD P-type_ATPase_H 36 877 IPR006534 GO:0008553|GO:0016020|GO:0120029
Viun4g00640 986 Coils Coil 937 957 - -
Viun4g00640 986 FunFam ATPase 4 plasma membrane-type 604 851 - -
Viun4g00640 986 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 883 IPR023298 -
Viun4g00640 986 Gene3D - 658 851 - -
Viun4g00640 986 Pfam E1-E2 ATPase 132 311 - -
Viun4g00640 986 Gene3D - 343 490 IPR023299 GO:0000166
Viun4g00640 986 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Viun4g00640 986 FunFam Plasma membrane ATPase 592 668 - -
Viun4g00640 986 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Viun4g00640 986 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun4g00640 986 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun4g00640 986 PRINTS H+-transporting ATPase (proton pump) signature 796 817 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun4g00640 986 Gene3D - 96 327 - -
Viun4g00640 986 SFLD Haloacid Dehalogenase 313 671 - -
Viun4g00640 986 PANTHER CALCIUM-TRANSPORTING ATPASE 19 919 - -
Viun4g00640 986 Gene3D - 328 570 IPR023214 -
Viun4g00640 986 Gene3D - 134 218 - -
Viun4g00640 986 Gene3D - 601 657 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00640 Viun-Chr4 4278909 4285524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00640 1 986 Primary Pumps ATPases AT5G62670 85.903 0.0 1726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00640 K01535 - gmx:100805218 1741.86