Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00616 ATGGCGATTCCAAGTTCCCCTGCATTCAGGTACGATGTGTTCCTCAGTTTTAGAGGGGAAGACACGCGTTATGGTTTAACCGGCAATCTCTACAAAGCTCTCCGTGACAGGGGAATTCACACTTTCATCGATGATGAGCACCTTCAGCGTGGAGATGAAATCACAGCAGCACTTCTGAAAGCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGCAGCCATCCTTGAGTGCAAGAATAAAGGGCTACTTATTATACCGGTATTTTATAAGGTGCACCCTTCAGATGTGAGACACCAGAAAGGTAGTTATGGAGAAGCATTCACTAAGCATCAGAGAAGGTTCAAAGATAAGAAGGAGAAGTTGCAAAAATGGAAGATGGCTCTGAGTCAAGTAGCTGAATTGTCTGGATATCATTTCGAAGAAGGTGATGGATACGAATACAAGTTTATTGAGAGTGTTGTGGACCGGGTCTGCCACAAGATTAATCCTGCTCGTTTACATGTTGCGGATTACCCTGTTGGATTAGGGCCACAAGTGCTAGAAGTAAGAAAGCTTCTAAACGTTGAATGTGGTGATGGATTCCACATGATAGGGATCCATGGAATGGGTGGCGTAGGAAAAACAACCCTCGCTTTAGCACTTTATAATTTGATTGCTGACTGTTTTGATAGTTCTTGTTTTGTTCAAAACGTGAGAGAGAAATCAAAAAAGCATGGGCTGGAACACCTCCAAAGCATTATTCTTTCGAACCTACTTGGAGCGAAGGACATCAACTTAACAAGTGAGCATCAAGGGATTTCAATGATACAACAAAGGTTGCAACGAAAGAAGGTTCTGTTGATTCTTGATGACGTTGACAGGTGCGAGCAGTTACAGGCTCTGACGGGAAGCCCTGATTGGTTTGGTCCCGGCAGCAGAGTCATCATCACAACTAGAGATACACAACCGCTTGCATCTCATCAGGTCACAGGAACATACGAGGTCAAGACATTGAATGCAAAGGACGCTCTTCAATTGCTTACATGGAAAGCTTTCAAAACGGAACAGGTTGATCCAAGTTACACGGAGGTCTTGAATGATGTAGTAAGTTATGCTTCTGGCCTTCCATTGGTTTTGGAAGTAATCGGTTCCAACCTGTTTGCAAAAAGTGTGGAAGAGTGGAAATCTGCTATCAATCAATATAAAAGAATTCCTAACAATCGAATCCTAGATATTCTTAAAGTAAGCTTCGATGGTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCGAAGGATATGAACTGACAGAGGTTGAGGTTATGCTTCGTGCACTCTACGATGACTGCATGAAATATCATATTGGGGTGCTGGTTCAAAAATCTCTCATTAAGATTTATTACTCGAGTACAATTGTAATGCATGATTTAATTTGGGACATGGGTAGACAAATTGACCGCAGAGAATCATCGAAAAAGCCAGGAAAGGGCAGGAGATTATGGTTACCTAAAGATATAATTCAAGTTTTAAGGGACAACACAGGAACTAGGGAAACTAAAATCCTATGCCTGGATTTGTCTATATCTGAGAAAGAAGAAACGCTAGAATGGAATGCCAACGCCTTCAGAAGGATGAAAAACCTTAAAATACTTATCATTAGAAATGGTAAATTTTCCAAAGGTCCCAATTATTTTCCAGAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTTCATCCGAACAAACTTGTGACATGCAAGTTGCCTAACAGTCCTTTTACGTCATTTGGGTTCCATGGTTCATCAAAGAAGTTCGAGAATTTAACCGACTTGAATTTTGACAATTGCCAACTTTTAACACGGATGCCTGACCTATCTGATCTCCCAAATCTGGAGAAACTTTCCTTTGAACGGTGTGAGAGTTTAATTGCACTTGACGACTCAATTGGTTTTCTGAATAAACTTAAAATATTGAAAGCTCAACATTGCACAAAACTTCAGAGATTTCCACCTCTCAACTTGCCCTCTCTTGAAGTACTTCAATTTCCATATTGTTACAGTCTGGAGAATTTTCCAGAAATATTAGGAAAGATGGGAAAAATAAGGGAACTTCATTTGTATGAACTTGCCATAAAAGAGTTGCCAGTTTCATTTCAAAATCTTACCGGACTCCGTGAGTTATACGCGGCATGTGATTTTCTTCAGTTAAATAGCAGTGCCTTGATGTCTTCGTTGACTGTTGTTGAAGCTTATGGATGCAAGGAGTGGAAATGGGTAAATCCAAAAGATGGTGAAGAAGTGAGCTTAACGGTATCTTCAAATATAAGGTGCTTTTGGTTATCGAGTTGCAACCTGAATGATGATTTTTTTTCAGCAGATTTCACGCAGTTGACCACAGTGAAGAGTTTAAACCTGTCGAGAAGTAATATCACATTTCTTCCTGAGTGCATCAAAGAATTTCACCACCTGGTTGCTCTTGATGTGAGTTATTGCAAGTATCTACAGGAAATCAGAGGGATTCCACCAAAGTTGAGAACGTTCAGAGCGATAGACTGTAGATCATTGACTTCCTCAAGTTCAAGCATGTTCCTAAATCAGCAAATTCACGAGGCTGGAAAGACTATGTTTGTGCTTCCAGGAGGAAGTATTCCAAGGTGGTTGGATAAAGAAAGCAGGGGACCTTCAATTTCTTTCTGGTTTCGTAATCAATTCCCTCCCAAAGTCCTTTGTTTCCTTATTGCATCTGTACGGGATGATACCTTTTTTCGCTTCGTTACTTTTGACGTGTTAATCAACGGCAAAGTTCAAGAATATCAAGCTGGTTATGATACGGATGTGATAATGGAGGAATTGGATCATATACACCTCTTTGATCTACATGTGTTGTTCTCTGAAAATCTGATTAAAATTCCTTCAGAAAAGGAGTGGAAGCATGTGGAGATTACATACGATGGTTTGTTTGATACCTCACTCATCAAATCAACGGGAATCCATATAGTCAAATCAAAAAGAAGAGGCATGAAGGACATTCGATATTATGATCCTTACACCACCACAAAAATGTGGCCATGTGTCATGGCCCAGAAAACTGCAAGAGAAGATTATGACACTGCAGCAACCCAAGTGAACAGCCCAATAACAAGGAGGAAACCCAAACGTAACAACACCAAACCTAAACATCTAAATGACTATGACTGCAGGGGACTTCTCCCTACACCTCCAGTAATCTCTCCTGTACCCCCAAAACTAAATATATTTCCATGTTCACCCACGGTAAAAATTAAGAATTACTAA 3354 0.4034 MAIPSSPAFRYDVFLSFRGEDTRYGLTGNLYKALRDRGIHTFIDDEHLQRGDEITAALLKAIEESRIAIVVLSHNYASSSFCLDELAAILECKNKGLLIIPVFYKVHPSDVRHQKGSYGEAFTKHQRRFKDKKEKLQKWKMALSQVAELSGYHFEEGDGYEYKFIESVVDRVCHKINPARLHVADYPVGLGPQVLEVRKLLNVECGDGFHMIGIHGMGGVGKTTLALALYNLIADCFDSSCFVQNVREKSKKHGLEHLQSIILSNLLGAKDINLTSEHQGISMIQQRLQRKKVLLILDDVDRCEQLQALTGSPDWFGPGSRVIITTRDTQPLASHQVTGTYEVKTLNAKDALQLLTWKAFKTEQVDPSYTEVLNDVVSYASGLPLVLEVIGSNLFAKSVEEWKSAINQYKRIPNNRILDILKVSFDGLEEEEKSVFLDIACCFEGYELTEVEVMLRALYDDCMKYHIGVLVQKSLIKIYYSSTIVMHDLIWDMGRQIDRRESSKKPGKGRRLWLPKDIIQVLRDNTGTRETKILCLDLSISEKEETLEWNANAFRRMKNLKILIIRNGKFSKGPNYFPESLRVLEWHGYPSNCLPSNFHPNKLVTCKLPNSPFTSFGFHGSSKKFENLTDLNFDNCQLLTRMPDLSDLPNLEKLSFERCESLIALDDSIGFLNKLKILKAQHCTKLQRFPPLNLPSLEVLQFPYCYSLENFPEILGKMGKIRELHLYELAIKELPVSFQNLTGLRELYAACDFLQLNSSALMSSLTVVEAYGCKEWKWVNPKDGEEVSLTVSSNIRCFWLSSCNLNDDFFSADFTQLTTVKSLNLSRSNITFLPECIKEFHHLVALDVSYCKYLQEIRGIPPKLRTFRAIDCRSLTSSSSSMFLNQQIHEAGKTMFVLPGGSIPRWLDKESRGPSISFWFRNQFPPKVLCFLIASVRDDTFFRFVTFDVLINGKVQEYQAGYDTDVIMEELDHIHLFDLHVLFSENLIKIPSEKEWKHVEITYDGLFDTSLIKSTGIHIVKSKRRGMKDIRYYDPYTTTKMWPCVMAQKTAREDYDTAATQVNSPITRRKPKRNNTKPKHLNDYDCRGLLPTPPVISPVPPKLNIFPCSPTVKIKNY 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00616 1117 Gene3D - 345 429 IPR042197 -
Viun4g00616 1117 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 868 IPR044974 GO:0006952
Viun4g00616 1117 Gene3D - 186 338 IPR027417 -
Viun4g00616 1117 Gene3D - 6 184 IPR035897 -
Viun4g00616 1117 Pfam TIR domain 11 177 IPR000157 GO:0007165
Viun4g00616 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 439 IPR027417 -
Viun4g00616 1117 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Viun4g00616 1117 Pfam NB-ARC domain 197 410 IPR002182 GO:0043531
Viun4g00616 1117 PRINTS Disease resistance protein signature 211 226 - -
Viun4g00616 1117 PRINTS Disease resistance protein signature 838 854 - -
Viun4g00616 1117 PRINTS Disease resistance protein signature 287 301 - -
Viun4g00616 1117 PRINTS Disease resistance protein signature 380 394 - -
Viun4g00616 1117 Gene3D Ribonuclease Inhibitor 695 890 IPR032675 -
Viun4g00616 1117 Gene3D Ribonuclease Inhibitor 531 693 IPR032675 -
Viun4g00616 1117 SUPERFAMILY L domain-like 547 881 - -
Viun4g00616 1117 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 152 IPR035897 -
Viun4g00616 1117 SUPERFAMILY "Winged helix" DNA-binding domain 416 522 IPR036390 -
Viun4g00616 1117 SMART till_3 10 149 IPR000157 GO:0007165
Viun4g00616 1117 MobiDBLite consensus disorder prediction 1064 1084 - -
Viun4g00616 1117 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00616 Viun-Chr4 4022918 4027886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00616 11 847 WRKY Transcription Factor Family AT4G12020 29.302 9.04e-75 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00616 - - var:108344036 1321.61