Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00588 ATGTCTTCTGCCGGCGGCGACGGTACCTCCGGCGAGTCTCGCCAATACTTCTGTCACCAGTGCAATCGCACCGTCTCTGTTACCCCTTCCCCTTCCTCCGATCTCGTCTGCCCCAATTGCAACGGCGGCTTCCTCGAAGAACTCGAAATCCCTAACCCTAACCCTATCCCTATCCCGTCCAATCCTTTCTTCCCCGACTTCCCCCTCGCCGGGGCCACCGCCATTCCCCTCATCTTCCCGGGAGGAGCCGGCCAGCCCTTCGACGATTTCTCCACCCTCTCCGGCACTCGATCTGACGCCGCCACCGCCGATACTGCCCTCGCCCCCTTTGTCCTCCTCCAGAACTACTTGCAAACCCTAAGAGCCGCCGGCGGCGGTGGAAACCTTCAACTGGTGATTGAGTCCGGGGATCCCGGCGGAGCGTTCCGGTTTCCTGGCATCACCCACGGCGACTACTTCTTCGGGACGGGCCTTGAGGAGCTGATCCAGCACCTTGCCGAGAACGATCCGAACCGCTATGGCACCCCACCGGCTTCTAAGAAGGCGGTGGAGGGGCTGCCGGACGTCTCGGTCACCGACGAGCTGCTTGCATCGGATTCGTCGCAATGTGCAGTGTGCAAAGACACGTTCGAACTCGGTGAAACCGCGAAGCAGATGCCCTGTAAGCATATATATCACGCGGACTGCATTTTGCCTTGGTTAGAATTGCATAATTCCTGTCCCGTTTGTCGGTATGAGCTGCCCACAGATGATCCTGATTACGAGCAGAGGGCTCATCGTGGTAGCGGTGGCGGAAGTGGAGGCGGTAGTGGTGGTACCGGCAGTGGGGTGGCTCCCCAGGTGAATTGGAACCTGGCTGTGGGGCCTGGTGGCTCTGCTGATTCGGCTGGTGGAGACAATTCCCAGCGGAGGAGGTTTAGGGTGTCTTTGCCGTGGCCCTTCAGGCAATCTTTTTCTTCTGGTGCTGAGACAAGTAATGTGGGCGGTGCCAACAATGATGACAACAGTAATATCAATAGTGGGGAAAACAATAGTGGGCAATCAAATTCTGGAAACAGGGGAAATCAGAATTTTGAGTCGGAGACCAGACAGGAAGATCTAGATTGA 1107 0.5736 MSSAGGDGTSGESRQYFCHQCNRTVSVTPSPSSDLVCPNCNGGFLEELEIPNPNPIPIPSNPFFPDFPLAGATAIPLIFPGGAGQPFDDFSTLSGTRSDAATADTALAPFVLLQNYLQTLRAAGGGGNLQLVIESGDPGGAFRFPGITHGDYFFGTGLEELIQHLAENDPNRYGTPPASKKAVEGLPDVSVTDELLASDSSQCAVCKDTFELGETAKQMPCKHIYHADCILPWLELHNSCPVCRYELPTDDPDYEQRAHRGSGGGSGGGSGGTGSGVAPQVNWNLAVGPGGSADSAGGDNSQRRRFRVSLPWPFRQSFSSGAETSNVGGANNDDNSNINSGENNSGQSNSGNRGNQNFESETRQEDLD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00588 368 MobiDBLite consensus disorder prediction 317 368 - -
Viun4g00588 368 Pfam Ring finger domain 202 244 IPR001841 -
Viun4g00588 368 MobiDBLite consensus disorder prediction 254 302 - -
Viun4g00588 368 SUPERFAMILY RING/U-box 186 251 - -
Viun4g00588 368 MobiDBLite consensus disorder prediction 317 358 - -
Viun4g00588 368 SMART ring_2 203 243 IPR001841 -
Viun4g00588 368 Pfam zinc-ribbon 15 48 IPR039525 GO:0061630
Viun4g00588 368 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Viun4g00588 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 123 248 - -
Viun4g00588 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 250 IPR013083 -
Viun4g00588 368 CDD RING-H2_RNF126-like 202 244 - -
Viun4g00588 368 FunFam E3 ubiquitin-protein ligase RING1-like 164 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00588 Viun-Chr4 3825026 3832722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00588 161 257 C3H Transcription Factor Family AT5G15820 53.608 1.05e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00588 K11982 - gmx:100818686 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00588 4 3825026 3832722 Viun4g00588 4 3825026 3832722 ECH