Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00587 ATGGCGACTCCAAGATTCGGATATGATGTGTTCCTCAGCTTCAAAGGGGAAGACACGCGTTATGGTTTTACCGGCAATCTCTACAAAGCTCTCTGTAACAGAGGAATTCACACTTTCATCGATGATGAGGAGCTTCAGAGCGGGGAGAAAATCACACCAGCACTTCAAAAATCAATTGAAGAATCTAGGATTGCCATAGTTGTGCTCTCTCAAAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTCGCAACCATCCTTCACTGCCACACCCAAGGATTGTTGGTTTTACCGGTCTTCTATAAGGTTCAACCTTCTGATGTCAGACACCAGAAAGGTAGTTATGGAGAAGAATTAACTAAGCATCAGAGAAGGTTCAAAGATAAGGAAAAGTTGCAGAAATGGAAGATGGCTCTGCGTCAAGTAGCTGATTTGTCTGGCTATCATTTCGAAGACTGTGATGGATACGAATACAAGTTTATTGAGAGTGTTGTGGACCGGGTCTGCCACAAGATTAATCCTGCTCGTTTACATGTTGCGGATTACCCTGTTGGACTAGGGCCACAAGTGCTAGAAGTAAGAAAGCTTCTAAACGTTGAATGTGGTGATGGATTCCACATGATAGGGATCCATGGAATGGGTGGCGTAGGAAAAACAACCCTCGCTTTAGCACTTTATAATTTGATTGCTGACTGTTTTGATGGTTCTTGTTTTCTTCAAAACGTGACAGAAAAATCAAACAAACATGGGCTGGAACACCTCCAAAACATCCTTCTTTCAAAAATACTTGGTGATAAGGACATCAACATAGCAAGTGAACATGAAGGAATTTCAATGATACAACAAAGGTTGCAGCGAAAAAAGGTTCTCTTGATTCTTGATAATGTTGACAAGTGCGAGCAGCTACAGACACTGGCTGGAAGCCCTGATTGGTTTGGTCCCGGCAGCAGGGTCATCATCACAACTCGAGATACACATCTGCTTGCATCTCATCAGGTCAAAACAACATATGAGGTCAAGACATTGAATAAAGATGATGCTCTTCAGTTACTTAAATGGAAAGCTTTCAAAACGAAACATGTTGATCCTCGTTACGTGGAGGTCTTAAATGATGTGGAAATTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAACCTGTTTGCAAAAACTGTGGAACAGTGGAAATCTGCTATCAATCAATATAAAAGAATTCCTAACAGTCAAATCCTTGATAAACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAGGAGAAGGGTGTTTTTCTTGACATAGCTTGTTGCTTCAAGGGATATATATTAAGAGATGTAGAAGATATTCTTGGAGCTATTTATGATGACTGCATGAAACATCATATTAGTGTGTTGGTTGATAAATCTCTCATAAAGATTGGTCAGTGGAGTACAGTTGAAATACACGACCTGATTGAGGAGATGGGTAGACAAATTGACCAACAAGAATCACCTGAAGGATCAGGGAAGCGCAGGAGATTATGGTTACCTAAAGATATAACTGAAGTTTTAAAGGACAACACTGGAACTAGCAGGATTGAGATACTATGTTTTCATATCTCCATATCTGAGAAAGAAGAAACACTAGATTGGAATAGAAATGCCTTTGGAAAAATGGAAAAGCTTAAAATACTTATCATTAGAAATGGTAAATTTTGCAAAGGTCCCAATTCTTTTCCAGAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCTAACTTTGATCCGAGTAAACTTGTGACATGCAAGTTACCTAACAGTCATTTTACATCATTTGGATTCCTTGGCTCCTCAAAGAAGTTAGAGAATCTAACGGAATTGAATTTTGACAATTGCCAACTTTTAACACGAATGCCTGACGTATCAGATCTCCCAAATTTGGAGAAACTCTCCTTTGATCTATGTAAGAGTTTAATTGCAGTTGACGACTCAATTGGTTTTCTGAACAAACTTAAAATATTGAAAGCTCGAGGTTGCACGAAGCTGAGGAGATTTCCACCTCTCAACTTGCCCTCTCTTGAAAAACTTAAACTTTCATATTGTTCAAGTCTTGAGAATTTTCCAGAAATATTAGGAAATATGGGAAATATTGAGAAACTTAAATTGTCTCAACTTCCCATGATAAAAGAGTTGCCAGTTTCATTTCAAAATCTTACTGGACTCCATCGGTTATTCGTGGCATGTGATTTTATTCGGTTAAATAGCCTTGCCTTGACGCCTTCATTGACTGATTTTGAAGCTTATGGATGCAAGGAGTGGAAATGGGTAAATCCAAAAGATGGTGAAGAAGTGGGCTCGACGGTATCTTCAAATATACTTGAGTTCTCGTTAACGGCTTGCAACCTGAATGATGACTTTTTTTCAGCAGGTTTCACGCAGTTGGGCACAGTGAAAAATTTAAACCTATCGAGAAGTAATATCACATTCCTTCCTGGGTGCATCAAAGAATTTCACTGCCTGAATTATCTCAATGTGAATAGATGCAAGCGTCTACAGGAAATTAGAGGGCTTCCACCAAACCTGAAACGTTTGAGGGCGATAAAGTGTACATCATTGACTTCCTCGGCTTCAAGCATGTTGTTAAATCAGCAACTTCACGAGGCTGGAGAGACTGATTTTATCTTTCCAGGAGGAAGTATTCCAAGGTGGTTGGATAAAGAAAGCAGGGGACCTTCAATTTCTTTCTGGTTTCGTAATGAATTCCCTCCCAAAGTTCTTTGTCTTCTTATTGCACCTGAACCGGTTGATATCACTGTGGAATTTAATACACCCGTGGTGTTAATCAACGGCAAAGTTCAAGAATATCGTTGGAATAGTATGGAGAGAGAAGTGAGGATGCTGGAATCTGATCATATACACCTCTTTGATCTACATGTGTTACCGTTCCGTTATAAACTGATGGAAATGTATTCAGAAAATGAGTGGAAGCATGTGGAGATTACATACCAAGGTTTGATTCATACCTCACTCATCAAAGGAATGGGAATCCATGTAGTGAAAGAGGAAAGAAGAGGCATGAAGGACATTAGATATGATGATCCTTACACCACCATAAAAATGTGTATAACTTCTCTTCCTTTCCTTTTTTGCTTTTACTTAGCTCTCATTTTATTTAGCTCTCATGGCCTACTCAACCCAACTATGACAACTCTATTTGGGTTTATGTTGTATAAAATATATTTGAAATCAATTGACATTGGTTGA 3264 0.3909 MATPRFGYDVFLSFKGEDTRYGFTGNLYKALCNRGIHTFIDDEELQSGEKITPALQKSIEESRIAIVVLSQNYASSSFCLDELATILHCHTQGLLVLPVFYKVQPSDVRHQKGSYGEELTKHQRRFKDKEKLQKWKMALRQVADLSGYHFEDCDGYEYKFIESVVDRVCHKINPARLHVADYPVGLGPQVLEVRKLLNVECGDGFHMIGIHGMGGVGKTTLALALYNLIADCFDGSCFLQNVTEKSNKHGLEHLQNILLSKILGDKDINIASEHEGISMIQQRLQRKKVLLILDNVDKCEQLQTLAGSPDWFGPGSRVIITTRDTHLLASHQVKTTYEVKTLNKDDALQLLKWKAFKTKHVDPRYVEVLNDVEIYASGLPLALEVIGSNLFAKTVEQWKSAINQYKRIPNSQILDKLKVSFDALEEEEKGVFLDIACCFKGYILRDVEDILGAIYDDCMKHHISVLVDKSLIKIGQWSTVEIHDLIEEMGRQIDQQESPEGSGKRRRLWLPKDITEVLKDNTGTSRIEILCFHISISEKEETLDWNRNAFGKMEKLKILIIRNGKFCKGPNSFPESLRVLEWHGYPSNCLPSNFDPSKLVTCKLPNSHFTSFGFLGSSKKLENLTELNFDNCQLLTRMPDVSDLPNLEKLSFDLCKSLIAVDDSIGFLNKLKILKARGCTKLRRFPPLNLPSLEKLKLSYCSSLENFPEILGNMGNIEKLKLSQLPMIKELPVSFQNLTGLHRLFVACDFIRLNSLALTPSLTDFEAYGCKEWKWVNPKDGEEVGSTVSSNILEFSLTACNLNDDFFSAGFTQLGTVKNLNLSRSNITFLPGCIKEFHCLNYLNVNRCKRLQEIRGLPPNLKRLRAIKCTSLTSSASSMLLNQQLHEAGETDFIFPGGSIPRWLDKESRGPSISFWFRNEFPPKVLCLLIAPEPVDITVEFNTPVVLINGKVQEYRWNSMEREVRMLESDHIHLFDLHVLPFRYKLMEMYSENEWKHVEITYQGLIHTSLIKGMGIHVVKEERRGMKDIRYDDPYTTIKMCITSLPFLFCFYLALILFSSHGLLNPTMTTLFGFMLYKIYLKSIDIG 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00587 1087 SMART till_3 7 145 IPR000157 GO:0007165
Viun4g00587 1087 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Viun4g00587 1087 Gene3D - 182 337 IPR027417 -
Viun4g00587 1087 PRINTS Disease resistance protein signature 688 704 - -
Viun4g00587 1087 PRINTS Disease resistance protein signature 283 297 - -
Viun4g00587 1087 PRINTS Disease resistance protein signature 207 222 - -
Viun4g00587 1087 PRINTS Disease resistance protein signature 376 390 - -
Viun4g00587 1087 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 174 - -
Viun4g00587 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 435 IPR027417 -
Viun4g00587 1087 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 148 IPR035897 -
Viun4g00587 1087 Gene3D - 341 425 IPR042197 -
Viun4g00587 1087 Gene3D Ribonuclease Inhibitor 754 888 IPR032675 -
Viun4g00587 1087 Gene3D Ribonuclease Inhibitor 689 753 IPR032675 -
Viun4g00587 1087 Gene3D Ribonuclease Inhibitor 536 688 IPR032675 -
Viun4g00587 1087 Gene3D - 3 180 IPR035897 -
Viun4g00587 1087 Pfam TIR domain 8 173 IPR000157 GO:0007165
Viun4g00587 1087 SUPERFAMILY L domain-like 543 878 - -
Viun4g00587 1087 SMART AAA_5 204 345 IPR003593 GO:0016887
Viun4g00587 1087 Pfam NB-ARC domain 193 407 IPR002182 GO:0043531
Viun4g00587 1087 SUPERFAMILY "Winged helix" DNA-binding domain 412 519 IPR036390 -
Viun4g00587 1087 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 871 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00587 Viun-Chr4 3819816 3823886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00587 4 744 WRKY Transcription Factor Family AT4G12020 30.809 2.27e-78 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00587 - - var:108344036 1326.61