LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g00585	ATGGCGACTCAAAGATTCGGATATGATGTGTTCCTAAGCTTCAGAGGGGAAGACACGCGTTATGGTTTCACCGGCAATCTCTACAAAGCTCTGTGTGACAGGGGAATTCATACTTTCATCGATGATGAGGAACTTCAGCGTGGAGATGAAATCACAGCAGCACTTATGAAAGCAATTGAAGAGTCTAGGATTGCCATCGTTTTGCTCTCTCAAAACTATGCTTCTTCCTCCTTCTGCTTGGATGAGCTTGCAACCATCCTTCACTGCCACACCAAAGGATTGTTGGTTATACCGCTCTTTTATAAGGTCAACCCTTCTGATGTCAGACATCATAGAGGTAGTTATGGAGAAGCATTGACTAAGCATCAGAGAATGTTTAAAGATAAGAAGAAGTTGCAGAAATGGAAGATGGCTCTGCGTCAAGTAGCTGACTTGTCTGGCTATCATATCAAAGACGGTGATGGATACGAATACAAGTTTATTGGGAGTGTTGTGGACGAGGTCTGCCACAAGATTAATCCAACTCGTTTACATGTTGCGGATTACCCTGTTGGACTAGGGCCACAAGTGCTTGAAGTGAGAAAGCTTTTAAATGTGGAATGTGGTGATGGATTCCACATGATAGGGGTCCATGGAATGGGTGGTGTAGGAAAAACAACACTCGCTTTAGCAGTTTATAATTTGATTGCTGACTGTTTTGATGGTTCTTGTTTTATTCAAAACGTGAGAGAGAAATCAAACAAACATGGGCTGGAACACCTCCAAAGCATCCTTCTTTCAAAAATACTTGGTGATAAGGACATCAACATAGCAAGTGAACATGAAGGAATTTCAATGATACAACAAAGGTTGCAGCGAAAAAAGGTTCTCTTGATTCTTGATAATGTTGACAAGTGCGAGCAGCTACAGACACTGGCTGGAAGCCCTGATTGGTTTGGTCCCGGCAGCAGGGTCATCATCACAACTCGAGATACACATCTGCTTGCATCTCATCAGGTCAAAACAACATATGAGGTCAAGACATTGAATAAAGATGATGCTCTTCAGTTACTTAAATGGAAAGCTTTCAAAACGAAACATGTTGATCCTCGTTACGTGGAGGTCTTAAATGATGTGGAAATTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAACCTGTTTGCAAAAACTGTGGAACAGTGGAAATCTGCTATCAATCAATATAAAAGAATTCCTAACAGTCAAATCCTTGATAAACTTAAAGTAAGCTTCGATGCTTTGGAGGAAGAGGAGAAGTGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATGAACTGACAGAGGTTGAGGTTATGCTTCGTGCTCTCTACGATGACTGCATGAAACATCATATTAGTGTGCTGCTTGAAAAATCTCTCATAAAGATTGGTTGGTTTAATACAATTGAAATGCACGAATTAATTGAGGACATGGGAAGACAAATTGACCAGAAACAATCATCGAAAGAGCCAGGAAAGCGCAGGAGATTATGGTTATCTAAAGATATAACTGATGTTTTAAAGGACAACACAGGAACTAGCAGGATTGAGATGCTATGTTTTGATATCTCCATGTCTGAGAAAGAAGAAACACTAGATTGGAATGGAAACGCCTTTGGAAATATGAAAAACCTTAAAATACTTGTTATTAGAAATGGGAAAGTTTCCGGAGGTCCCAATTGTTTTCCAGAAAGTTTGAGAGTACTGGAATGGCATGAATACCCTTCAAATTGTTTACCATCTAACTTTGATCCGACAAAACTTGTGACATGCAAGTTACCTAACAGTCATTTTACGTCATTTGGATTTGGCTCATCAAAGAAGTTAGAGAATCTAACCGAATTGAATTTTGACAACTGCCAACTTTTAACACGGATGCCTGACGTATCAGATCTCCCAAATTTGGAGAAACTTTCCTTTGAGCGGTGTAAGAGTTTAATTGCAGTTGAGGAGTCAATTGGTTTTCTAAATAAACTTAAAATATTGAAAGCTCAACGTTGCACGAAGCTTAGGAGGTTTCCACCTCTGAACTTGCCCTCTCTTGAAAAACTTGAACTTTCAGATTGTTCAAGTCTTGAGAATTTTCCAGAAATATTAGGAGAGATGGGAAATATTGGGGAACTTAGTTTGTCTAAACTTGCCATAAAAGAGTTAACAGTTTCATTTCAAAATCTTACTGGGCTCCGAGAATTAGACGTGAAATGTGATTTTCTTCAGTTAAGTCACATTGCCTTGACGCCTTCATTGTGTGATTTGAACGTTGGTAAATGCAAGGAGTGGAAATGGGTAAAATCAAAAGATGGAGAAGAAGAAATGGGCTCAACGGTATTTTCAGATCTACGTTACTTTCAGCTTAACTCCTGCAACCTGAACGATGATTTTTTTCGAGCAGGTTTCACGCAGTTGACCACAGTGATTTCCTTAAACCTATCGGAAACTGATATCACATTCATTCCTGAGTGCATCAAAGAATTTCACTGCCTGTATGATCTTAATGTGAATAGATGCACGCGTCTACAGGAAATTAGAGGGGTTCCACCAAACCTGCATACTTTCTGGGCGATAGAGTGTACATCATTGACTTCCTCGGGTTCAAGCATGTTGTTGAATCAGCTTCGACGGACTACTTTTATGTATCGAGGAGGAAGTATTCCAAGGTGGTTTGATAAAGAAAGCAGAGGACCTTCAATTTCTTTCTGGTTTCGTAATGAATTCCCTCCCAAAGTTCTTTGTCTTCTTATTGCACCTGTACTTGATGATATCACTTTAAACTTGGTTATACCCGTGGTGTTAATCAACGGCAAAGATCTAGAATATACTTCTTTGAGCCGTCGGAAGAGACGAGTGAGGATGGTGGAATTGGATCATATACACCTCTTTGATCTACATGACTTTCAGTTCCTTGAAGATCTGAGGAAAATGGCTTCAGAAAAGGAGTGGAAGCATGTGGAGATTACATACCAAGGTTTGTTTGATACCTCACTCATCAAATCAATGGGAATCCATATAGTCAAATCGGAAAGAAGAGGCATAAAGGACATTCGATATGATGATCCTTACACCACCACAAAAGTGTCCCCATTCAACTTCTTTATAACTTTTCTTCCTTTCTTTTCTCGCTTTTTGTTTGCCCTCATTTTATTTATTAGTATCATGGCCTACCCAATCCAATTATGA	3210	0.3956	MATQRFGYDVFLSFRGEDTRYGFTGNLYKALCDRGIHTFIDDEELQRGDEITAALMKAIEESRIAIVLLSQNYASSSFCLDELATILHCHTKGLLVIPLFYKVNPSDVRHHRGSYGEALTKHQRMFKDKKKLQKWKMALRQVADLSGYHIKDGDGYEYKFIGSVVDEVCHKINPTRLHVADYPVGLGPQVLEVRKLLNVECGDGFHMIGVHGMGGVGKTTLALAVYNLIADCFDGSCFIQNVREKSNKHGLEHLQSILLSKILGDKDINIASEHEGISMIQQRLQRKKVLLILDNVDKCEQLQTLAGSPDWFGPGSRVIITTRDTHLLASHQVKTTYEVKTLNKDDALQLLKWKAFKTKHVDPRYVEVLNDVEIYASGLPLALEVIGSNLFAKTVEQWKSAINQYKRIPNSQILDKLKVSFDALEEEEKCVFLDIACCFKGYELTEVEVMLRALYDDCMKHHISVLLEKSLIKIGWFNTIEMHELIEDMGRQIDQKQSSKEPGKRRRLWLSKDITDVLKDNTGTSRIEMLCFDISMSEKEETLDWNGNAFGNMKNLKILVIRNGKVSGGPNCFPESLRVLEWHEYPSNCLPSNFDPTKLVTCKLPNSHFTSFGFGSSKKLENLTELNFDNCQLLTRMPDVSDLPNLEKLSFERCKSLIAVEESIGFLNKLKILKAQRCTKLRRFPPLNLPSLEKLELSDCSSLENFPEILGEMGNIGELSLSKLAIKELTVSFQNLTGLRELDVKCDFLQLSHIALTPSLCDLNVGKCKEWKWVKSKDGEEEMGSTVFSDLRYFQLNSCNLNDDFFRAGFTQLTTVISLNLSETDITFIPECIKEFHCLYDLNVNRCTRLQEIRGVPPNLHTFWAIECTSLTSSGSSMLLNQLRRTTFMYRGGSIPRWFDKESRGPSISFWFRNEFPPKVLCLLIAPVLDDITLNLVIPVVLINGKDLEYTSLSRRKRRVRMVELDHIHLFDLHDFQFLEDLRKMASEKEWKHVEITYQGLFDTSLIKSMGIHIVKSERRGIKDIRYDDPYTTTKVSPFNFFITFLPFFSRFLFALILFISIMAYPIQL	1069

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g00585	1069	FunFam	Disease resistance protein (TIR-NBS-LRR class)	4	174	-	-
	Viun4g00585	1069	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	148	IPR035897	-
	Viun4g00585	1069	Gene3D	-	2	180	IPR035897	-
	Viun4g00585	1069	Gene3D	Ribonuclease Inhibitor	705	900	IPR032675	-
	Viun4g00585	1069	Gene3D	-	182	337	IPR027417	-
	Viun4g00585	1069	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	8	709	IPR044974	GO:0006952
	Viun4g00585	1069	Gene3D	-	341	425	IPR042197	-
	Viun4g00585	1069	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	173	435	IPR027417	-
	Viun4g00585	1069	SMART	till_3	7	145	IPR000157	GO:0007165
	Viun4g00585	1069	SUPERFAMILY	"Winged helix" DNA-binding domain	412	519	IPR036390	-
	Viun4g00585	1069	Pfam	NB-ARC domain	193	407	IPR002182	GO:0043531
	Viun4g00585	1069	Pfam	TIR domain	8	173	IPR000157	GO:0007165
	Viun4g00585	1069	PRINTS	Disease resistance protein signature	207	222	-	-
	Viun4g00585	1069	PRINTS	Disease resistance protein signature	283	297	-	-
	Viun4g00585	1069	PRINTS	Disease resistance protein signature	376	390	-	-
	Viun4g00585	1069	PRINTS	Disease resistance protein signature	687	703	-	-
	Viun4g00585	1069	SUPERFAMILY	L domain-like	544	885	-	-
	Viun4g00585	1069	Gene3D	Ribonuclease Inhibitor	535	704	IPR032675	-
	Viun4g00585	1069	ProSiteProfiles	TIR domain profile.	6	172	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g00585	Viun-Chr4	3777675	3781670	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g00585	8	745	WRKY Transcription Factor Family	AT4G12020	29.117	4.00e-75	270

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g00585	-		-	vun:114181898	1346.26