Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00584 ATGGCGATTCAAAATTCCCCTGCATTCACATATGAAGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTCATGATTTCACCGGCAATCTCTACAAAGCTCTGTGTGACAGAGGAATTCACACTTTCATCGATGATGAGGATCTTCAGAGTGGAGAGGAAATCACACCAGCACTTGCGAAGGCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGTAGTAATCCTTGACTGCAAGAATAAAGGACTACTTGTTATACCAGTATTTTATAAGGTGGATCCTTCAGACGTGAGACACCAGAAAGAGAGTTATGGAGAAGCATTGACAAAGCGTCAGAGAAGGTTTGAAGATGTGGAGAAGGTGCAGAAATGGAAGATGGCTCTGCGTCAAGTAGCTGATTTATCTGGCTATCATTTCAAAGACGGTGATGGATACGAATACAAGTTTATTGAGAGTGTTGTGGACCGGGTCTGCCACAAGATTAATCCTGCTCGTTTACATGTTGCGGATTACCCTGTTGGACTAGGGCCACAAGTGCTAGAAGTAAGAAAGCTTCTAAACGTTGAATGTGGTGATGGATTCCACATGATAGGGATCCATGGAATGGGTGGCGTAGGAAAAACAACCCTCGCTTTAGCACTTTATAATTTGATTGCTGACTGTTTTGATGGTTCTTGTTTTCTTCAAAACGTGACAGAAAAATCAAACAAACATGGGCTGGAACACCTCCAAAACATCCTTCTTTCAAAAATACTTGGTGATAAGGACATCAACATAGCAAGTGAACATGAAGGAATTTCAATGATACAACAAAGGTTGCAGCGAAAAAAGGTTCTCTTGATTCTTGATAATGTTGACAAGTGCGAGCAGCTACAGACACTGGCTGGAAGCCCTGATTGGTTTGGTCCCGGCAGCAGGGTCATCATCACAACTCGAGATACACATCTGCTTGCATCTCATCAGGTCAAAACAACATATGAGGTCAAGACATTGAATAAAGATGATGCTCTTCAGTTACTTAAATGGAAAGCTTTCAAAACGAAACATGTTGATCCTCGTTACGTGGAGGTCTTAAATGATGTGGAAATTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAACCTGTTTGCAAAAACTGTGGAACAGTGGAAATCTGCTATCAATCAATATAAAAGAATTCCTAACAGTCAAATCCTTGATAAACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAGGAGAAGGGTGTTTTTCTTGACATAGCTTGTTGCTTCAAGGGATATATATTAAGAGATGTAGAAGATATTCTTGGAGCTATTTATGATGACTGCATGAAACATCATATTAGTGTGTTGGTTGATAAATCTCTCATAAAGATTGGTCAGTGGAGTACAGTTGAAATACACGACCTGATTGAGGAGATGGGTAGACAAATTGACCAACAAGAATCACCTGAAGGATCAGGGAAGCGCAGGAGATTATGGTTACCTAAAGATATAACTGAAGTTTTAAAGGACAACACTGGAACTAGCAGGATTGAGATACTATGTTTTCATATCTCCATATCTGAGAAAGAAGAAACACTAGATTGGAATAGAAATGCCTTTGGAAAAATGGAAAAGCTTAAAATACTTATCATTAGAAATGGTAAATTTTGCAAAGGTCCCAATTCTTTTCCAGAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCTAACTTTGATCCGAGTAAACTTGTGACATGCAAGTTACCTAACAGTCATTTTACATCATTTGGATTCCTTGGCTCCTCAAAGAAGTTAGAGAATCTAACGGAATTGAATTTTGACAATTGCCAACTTTTAACACGAATGCCTGACGTATCAGATCTCCCAAATTTGGAGAAACTCTCCTTTGATCTATGTAAGAGTTTAATTGCAGTTGACGACTCAATTGGTTTTCTGAACAAACTTAAAATATTGAAAGCTCGAGGTTGCACGAAGCTGAGGAGATTTCCACCTCTCAACTTGCCCTCTCTTGAAAAACTTAAACTTTCATATTGTTCAAGTCTTGAGAATTTTCCAGAAATATTAGGAAATATGGGAAATATTGAGAAACTTAAATTGTCTCAACTTCCCATGATAAAAGAGTTGCCAGTTTCATTTCAAAATCTTACTGGACTCCATCGGTTATTCGTGGCATGTGATTTTATTCGGTTAAATAGCCTTGCCTTGACGCCTTCATTGACTGATTTTGAAGCTTATGGATGCAAGGAGTGGAAATGGGTAAATCCAAAAGATGGTGAAGAAGTGGGCTCGACGGTATCTTCAAATATACTTGAGTTCTCGTTAACGGCTTGCAACCTGAATGATGACTTTTTTTCAGCAGGTTTCACGCAGTTGGGCACAGTGAAAAATTTAAACCTATCGAGAAGTAATATCACATTCCTTCCTGGGTGCATCAAAGAATTTCACTGCCTGAATTATCTCAATGTGAATAGATGCAAGCGTCTACAGGAAATTAGAGGGCTTCCACCAAACCTGAAACGTTTGAGGGCGATAAAGTGTACATCATTGACTTCCTCGGCTTCAAGCATGTTGTTAAATCAGCAACTTCACGAGGCTGGAGAGACTGATTTTATCTTTCCAGGAGGAAGTATTCCAAGGTGGTTGGATAAAGAAAGCAGGGGACCTTCAATTTCTTTCTGGTTTCGTAATGAATTCCCTCCCAAAGTTCTTTGTCTTCTTATTGCACCTGAACCGGTTGATATCACTGTGGAATTTAATACACCCGTGGTGTTAATCAACGGCAAAGTTCAAGAATATCGTTGGAATAGTATGGAGAGAGAAGTGAGGATGCTGGAATCTGATCATATACACCTCTTTGATCTACATGTGTTACCGTTCCGTTATAAACTGATGGAAATGTATTCAGAAAATGAGTGGAAGCATGTGGAGATTACATACCAAGGTTTGATTCATACCTCACTCATCAAAGGAATGGGAATCCATGTAGTGAAAGAGGAAAGAAGAGGCATGAAGGACATTAGATATGATGATCCTTACACCACCATAAAAATGTGTATAACTTCTCTTCCTTTCCTTTTTTGCTTTTACTTAGCTCTCATTTTATTTAGCTCTCATGGCCTACTCAACCCAACTATGACAACTCTATTTGGGTTTATGTTGTATAAAATATATTTGAAATCAATTGACATTGGTTGA 3273 0.3917 MAIQNSPAFTYEVFLSFRGEDTRHDFTGNLYKALCDRGIHTFIDDEDLQSGEEITPALAKAIEESRIAIVVLSHNYASSSFCLDELVVILDCKNKGLLVIPVFYKVDPSDVRHQKESYGEALTKRQRRFEDVEKVQKWKMALRQVADLSGYHFKDGDGYEYKFIESVVDRVCHKINPARLHVADYPVGLGPQVLEVRKLLNVECGDGFHMIGIHGMGGVGKTTLALALYNLIADCFDGSCFLQNVTEKSNKHGLEHLQNILLSKILGDKDINIASEHEGISMIQQRLQRKKVLLILDNVDKCEQLQTLAGSPDWFGPGSRVIITTRDTHLLASHQVKTTYEVKTLNKDDALQLLKWKAFKTKHVDPRYVEVLNDVEIYASGLPLALEVIGSNLFAKTVEQWKSAINQYKRIPNSQILDKLKVSFDALEEEEKGVFLDIACCFKGYILRDVEDILGAIYDDCMKHHISVLVDKSLIKIGQWSTVEIHDLIEEMGRQIDQQESPEGSGKRRRLWLPKDITEVLKDNTGTSRIEILCFHISISEKEETLDWNRNAFGKMEKLKILIIRNGKFCKGPNSFPESLRVLEWHGYPSNCLPSNFDPSKLVTCKLPNSHFTSFGFLGSSKKLENLTELNFDNCQLLTRMPDVSDLPNLEKLSFDLCKSLIAVDDSIGFLNKLKILKARGCTKLRRFPPLNLPSLEKLKLSYCSSLENFPEILGNMGNIEKLKLSQLPMIKELPVSFQNLTGLHRLFVACDFIRLNSLALTPSLTDFEAYGCKEWKWVNPKDGEEVGSTVSSNILEFSLTACNLNDDFFSAGFTQLGTVKNLNLSRSNITFLPGCIKEFHCLNYLNVNRCKRLQEIRGLPPNLKRLRAIKCTSLTSSASSMLLNQQLHEAGETDFIFPGGSIPRWLDKESRGPSISFWFRNEFPPKVLCLLIAPEPVDITVEFNTPVVLINGKVQEYRWNSMEREVRMLESDHIHLFDLHVLPFRYKLMEMYSENEWKHVEITYQGLIHTSLIKGMGIHVVKEERRGMKDIRYDDPYTTIKMCITSLPFLFCFYLALILFSSHGLLNPTMTTLFGFMLYKIYLKSIDIG 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00584 1090 Gene3D - 5 183 IPR035897 -
Viun4g00584 1090 SMART till_3 10 148 IPR000157 GO:0007165
Viun4g00584 1090 SMART AAA_5 207 348 IPR003593 GO:0016887
Viun4g00584 1090 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 177 - -
Viun4g00584 1090 Gene3D Ribonuclease Inhibitor 539 691 IPR032675 -
Viun4g00584 1090 Gene3D Ribonuclease Inhibitor 757 891 IPR032675 -
Viun4g00584 1090 Gene3D Ribonuclease Inhibitor 692 756 IPR032675 -
Viun4g00584 1090 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 151 IPR035897 -
Viun4g00584 1090 Gene3D - 344 428 IPR042197 -
Viun4g00584 1090 SUPERFAMILY L domain-like 546 881 - -
Viun4g00584 1090 Pfam NB-ARC domain 196 410 IPR002182 GO:0043531
Viun4g00584 1090 PRINTS Disease resistance protein signature 691 707 - -
Viun4g00584 1090 PRINTS Disease resistance protein signature 210 225 - -
Viun4g00584 1090 PRINTS Disease resistance protein signature 286 300 - -
Viun4g00584 1090 PRINTS Disease resistance protein signature 379 393 - -
Viun4g00584 1090 Pfam TIR domain 11 176 IPR000157 GO:0007165
Viun4g00584 1090 SUPERFAMILY "Winged helix" DNA-binding domain 415 522 IPR036390 -
Viun4g00584 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 438 IPR027417 -
Viun4g00584 1090 Gene3D - 185 340 IPR027417 -
Viun4g00584 1090 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 874 IPR044974 GO:0006952
Viun4g00584 1090 ProSiteProfiles TIR domain profile. 9 175 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00584 Viun-Chr4 3769861 3823886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00584 6 747 WRKY Transcription Factor Family AT4G12020 30.275 1.13e-75 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00584 - - var:108344036 1323.15