LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g00583	ATGGCGATTCAAAATTCCCCTGCATTCACATATGAAGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTCATGATTTCACCGGCAATCTCTACAAAGCTCTGTGTGACAGAGGAATTCACACTTTCATCGATGATGAGGATCTTCAGAGTGGAGAGGAAATCACACCAGCACTTGCGAAGGCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGTAGTAATCCTTGACTGCAAGAATAAAGGACTACTTGTTATACCAGTATTTTATAAGGTGGATCCTTCAGACGTGAGACACCAGAAAGAGAGTTATGGAGAAGCATTGACAAAGCGTCAGAGAAGGTTTGAAGATGTGGAGAAGGTGCAGAAATGGAAGATGGCTCTGCGTCAAGTAGCTGATTTATCTGGCTATCATTTCAAAGACGGTGATGGATACGAATACAAGTTTATTGAGAGTGTTGTGGACCGGGTCTGCCACAAGATTAATCCTGCTCGTTTACATGTTGCGGATTACCCTGTTGGACTAGGGCCACAAGTGCTAGAAGTAAGAAAGCTTCTAAACGTTGAATGTGGTGATGGATTCCACATGATAGGGATCCATGGAATGGGTGGCGTAGGAAAAACAACCCTCGCTTTAGCACTTTATAATTTGATTGCTGACTGTTTTGATGGTTCTTGTTTTCTTCAAAACGTGACAGAAAAATCAAACAAACATGGGCTGGAACACCTCCAAAACATCCTTCTTTCAAAAATACTTGGTGATAAGGACATCAACATAGCAAGTGAACATGAAGGAATTTCAATGATACAACAAAGGTTGCAGCGAAAAAAGGTTCTCTTGATTCTTGATAATGTTGACAAGTGCGAGCAGCTACAGACACTGGCTGGAAGCCCTGATTGGTTTGGTCCCGGCAGCAGGGTCATCATCACAACTCGAGATACACATCTGCTTGCATCTCATCAGGTCAAAACAACATATGAGGTCAAGACATTGAATAAAGATGATGCTCTTCAGTTACTTAAATGGAAAGCTTTCAAAACGAAACATGTTGATCCTCGTTACGTGGAGGTCTTAAATGATGTGGAAATTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAACCTGTTTGCAAAAACTGTGGAACAGTGGAAATCTGCTATCAATCAATATAAAAGAATTCCTAACAGTCAAATCCTTGATAAACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAGGAGAAGGGTGTTTTTCTTGACATAGCTTGTTGCTTCAAGGGATATATATTAAGAGATGTAGAAGATATTCTTGGAGCTATTTATGATGACTGCATGAAACATCATATTAGTGTGTTGGTTGATAAATCTCTCATAAAGATTGGTCAGTGGAGTACAGTTGAAATACACGACCTGATTGAGGAGATGGGTAGACAAATTGACCAACAAGAATCACCTGAAGGATCAGGGAAGCGCAGGAGATTATGGTTACCTAAAGATATAACTGAAGTTTTAAAGGACAACACTGGAACTAGCAGGATTGAGATACTATGTTTTCATATCTCCATATCTGAGAAAGAAGAAACACTAGATTGGAATAGAAATGCCTTTGGAAAAATGGAAAAGCTTAAAATACTTATCATTAGAAATGGTAAATTTTGCAAAGGTCCCAATTCTTTTCCAGAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCTAACTTTGATCCGAGTAAACTTGTGACATGCAAGTTACCTAACAGTCATTTTACATCATTTGGATTCCTTGGCTCCTCAAAGAAGTTAGAGAATCTAACGGAATTGAATTTTGACAATTGCCAACTTTTAACACGAATGCCTGACGTATCAGATCTCCCAAATTTGGAGAAACTCTCCTTTGATCTATGTTTCACGCAGTTGGGCACAGTGAAAAATTTAAACCTATCGAGAAGTAATATCACATTCCTTCCTGGGTGCATCAAAGAATTTCACTGCCTGAATTATCTCAATGTGAATAGATGCAAGCGTCTACAGGAAATTAGAGGGCTTCCACCAAACCTGAAACGTTTGAGGGCGATAAAGTGTACATCATTGACTTCCTCGGCTTCAAGCATGTTGTTAAATCAGCAACTTCACGAGGCTGGAGAGACTGATTTTATCTTTCCAGGAGGAAGTATTCCAAGGTGGTTGGATAAAGAAAGCAGGGGACCTTCAATTTCTTTCTGGTTTCGTAATGAATTCCCTCCCAAAGTTCTTTGTCTTCTTATTGCACCTGAACCGGTTGATATCACTGTGGAATTTAATACACCCGTGGTGTTAATCAACGGCAAAGTTCAAGAATATCGTTGGAATAGTATGGAGAGAGAAGTGAGGATGCTGGAATCTGATCATATACACCTCTTTGATCTACATGTGTTACCGTTCCGTTATAAACTGATGGAAATGTATTCAGAAAATGAGTGGAAGCATGTGGAGATTACATACCAAGGTTTGATTCATACCTCACTCATCAAAGGAATGGGAATCCATGTAGTGAAAGAGGAAAGAAGAGGCATGAAGGACATTAGATATGATGATCCTTACACCACCATAAAAATGTGTATAACTTCTCTTCCTTTCCTTTTTTGCTTTTACTTAGCTCTCATTTTATTTAGCTCTCATGGCCTACTCAACCCAACTATGACAACTCTATTTGGGTTTATGTTGTATAAAATATATTTGAAATCAATTGACATTGGTTGA	2808	0.3942	MAIQNSPAFTYEVFLSFRGEDTRHDFTGNLYKALCDRGIHTFIDDEDLQSGEEITPALAKAIEESRIAIVVLSHNYASSSFCLDELVVILDCKNKGLLVIPVFYKVDPSDVRHQKESYGEALTKRQRRFEDVEKVQKWKMALRQVADLSGYHFKDGDGYEYKFIESVVDRVCHKINPARLHVADYPVGLGPQVLEVRKLLNVECGDGFHMIGIHGMGGVGKTTLALALYNLIADCFDGSCFLQNVTEKSNKHGLEHLQNILLSKILGDKDINIASEHEGISMIQQRLQRKKVLLILDNVDKCEQLQTLAGSPDWFGPGSRVIITTRDTHLLASHQVKTTYEVKTLNKDDALQLLKWKAFKTKHVDPRYVEVLNDVEIYASGLPLALEVIGSNLFAKTVEQWKSAINQYKRIPNSQILDKLKVSFDALEEEEKGVFLDIACCFKGYILRDVEDILGAIYDDCMKHHISVLVDKSLIKIGQWSTVEIHDLIEEMGRQIDQQESPEGSGKRRRLWLPKDITEVLKDNTGTSRIEILCFHISISEKEETLDWNRNAFGKMEKLKILIIRNGKFCKGPNSFPESLRVLEWHGYPSNCLPSNFDPSKLVTCKLPNSHFTSFGFLGSSKKLENLTELNFDNCQLLTRMPDVSDLPNLEKLSFDLCFTQLGTVKNLNLSRSNITFLPGCIKEFHCLNYLNVNRCKRLQEIRGLPPNLKRLRAIKCTSLTSSASSMLLNQQLHEAGETDFIFPGGSIPRWLDKESRGPSISFWFRNEFPPKVLCLLIAPEPVDITVEFNTPVVLINGKVQEYRWNSMEREVRMLESDHIHLFDLHVLPFRYKLMEMYSENEWKHVEITYQGLIHTSLIKGMGIHVVKEERRGMKDIRYDDPYTTIKMCITSLPFLFCFYLALILFSSHGLLNPTMTTLFGFMLYKIYLKSIDIG	935

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g00583	935	Pfam	TIR domain	11	176	IPR000157	GO:0007165
	Viun4g00583	935	Gene3D	Ribonuclease Inhibitor	537	738	IPR032675	-
	Viun4g00583	935	SMART	till_3	10	148	IPR000157	GO:0007165
	Viun4g00583	935	Gene3D	-	185	341	IPR027417	-
	Viun4g00583	935	SMART	AAA_5	207	348	IPR003593	GO:0016887
	Viun4g00583	935	SUPERFAMILY	L domain-like	546	724	-	-
	Viun4g00583	935	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	176	438	IPR027417	-
	Viun4g00583	935	Pfam	NB-ARC domain	196	410	IPR002182	GO:0043531
	Viun4g00583	935	Gene3D	-	5	183	IPR035897	-
	Viun4g00583	935	Gene3D	-	344	428	IPR042197	-
	Viun4g00583	935	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	11	720	IPR044974	GO:0006952
	Viun4g00583	935	PRINTS	Disease resistance protein signature	286	300	-	-
	Viun4g00583	935	PRINTS	Disease resistance protein signature	622	638	-	-
	Viun4g00583	935	PRINTS	Disease resistance protein signature	210	225	-	-
	Viun4g00583	935	PRINTS	Disease resistance protein signature	379	393	-	-
	Viun4g00583	935	FunFam	Disease resistance protein (TIR-NBS-LRR class)	8	177	-	-
	Viun4g00583	935	ProSiteProfiles	TIR domain profile.	9	175	IPR000157	GO:0007165
	Viun4g00583	935	SUPERFAMILY	"Winged helix" DNA-binding domain	415	522	IPR036390	-
	Viun4g00583	935	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	151	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g00583	Viun-Chr4	3769860	3823886	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g00583	6	712	WRKY Transcription Factor Family	AT4G12020	27.989	7.01e-65	237

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g00583	-		-	var:108344036	944.11