Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00581 ATGGCGCCTCCAAGGTCCCCTGCATTCAGATATGATGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTTATGGTTTTACTGGCAATCTCTACAAAGCTCTCTGTAACAGAGGAATTCACACTTTCATCGATGATGAGGAGCTTCAGAGCGGGGAGGAAATCACACCAGCACTTCAGAAATCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCAAAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGTCACCATCCTTCACTGCCACACCCAAGGATTGTTGGTTATTCCGCTCTTCTATAAGGTCAAACCTTCTGATGTCAGACACCACAGAGGTAGTTATGGAGAAGCAGTGAGTAACCATCAGAAAAGGTTCAAAGATAAGAAGGAGAAGGTGCATAAATGGAAGATGGCTCTGCGTCATGTAGCTGACTTGTCTGGCTGTCATTTCAAAGAAGGTGATGGATACGAATACAAGTTTATTGGGAGTGTTGTGGACGAGGTCTGCCACAAGATTAATCCAACTCGTTTACATGTTACGGATTACCCTGTTGGACTAGGGCCACAAGTGCTTGAAGTGAGAAAGCTTTTAAATGTGGAATGTGGTGATGGATTCCACATGATAGGGATCCATGGAATGGGTGGTGTAGGAAAAACAACACTCGCTTTAGCACTTTATAATTTGATTGCGGTCTGTTTTGATGGTTCTTGTTTTCTTCAGAACGTGACAGAAAAATCAAACAAACATGGGCTGGAACACCTCCAAAGCATCCTTCTTTCAAAAATACTTGGTGATAAGGACATCAACATAGCAAGTGAACATGAAGGAATTTCAATGATACACCAAAGGTTGCAGAGAAAAAAGGTTCTCTTGATTCTTGACGATGTTGACAAGTGCGAACAGCTACAGAGACTGGTTGGAAGTCCTGATTGGTTTGGTCCCGGCAGCAGGGTCATCATCACAACTCGAGATACACATCTGCTTGCATCTCATCAGGTCAAAACAACATATGAGGTCAAGACATTGAATAAAGATGATGCTCTTCAGTTGCTTACATGGAAAGCTTTCAAAACGGAACATGTTAATCCAAGTTATGTGGAGGTCTTGAATGGTGTAGTAACTTATGCTTCTGGCCTTCCATTGGTTTTGGAAGTAATTGGTTCCAACCTGTTTGCAAAAGGTGTGGAACAGTGGAAATCTGCTATCAATCAATATAAAAGAATTCCAAACAAAAAAATCCTAGAGATAATGAAAGTAAGTTTCGATGCTTTGGAGGAAGAAGAGAAAAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATAAATTGACAGAGGTTGAGATTATGCTTCGAGCTCTTTATGATGACTGCATGAAACATCATATCGGGGTGTTGGTTGAAAAATCTCTCATAAAGGTTAGTCGGGGTGGAACAGTTGAATTGCACGACTTGATTAAGGACATGGGTAGACAAATTGACCAGAAAGAATCACCGAAAGAACCAGGGAAGCGCAAGAGATTATGGTTACCGAAAGATATAATCCAAGTTCTAAAATGCAACAAGGGAACAGGTGAGATTGAAATGGTATGTCTGGATCTCTCCCCATCTGACAGAGGAGAAGTGGTGGAATGGAATGGAATGGCCTTCCAGGACATGGAAAACCTCAAAATACTTATTATTAGAAATTGTAAATTTTCCAAAGGTCCCAAATATCTTCCAAATAAGTTGACAGTGCTGGAATGGTGGAGATATCCTTCACCTTGTTTACCATATGACTTTAATGCCAACAAACTTGTCATATGCAAACTACCTGACAGTTGCTTTACATCATTTGGATTCCATGGCTCATCAAAGAAGTTTGAGAATCTAACCGTCTTGAAATTTGACTACTGCAAACATTTAACACGGATACATGACATATCTGATCTGCCAAACTTGGAGAAACTTTCATTTAAATGGTGTGAAAGTTTAGTTTCAGTTCACAACTCTGTTGGTTTTCTGACTAAACTCAAAATACTAATTGCTGAAAGATGCGAGAAGCTACGAAGATTTCTGCCTCTCAACTTGACTTCTCTTGAAAGACTAGAACTTTCGTATTGTTCCAGTCTTGAGAATTTTCCAGAAATATTGGGAAACATGGGAAACATAAGGAAACTTAGTTTGCTTAAACTTCCCATCAAAGAATTACCAGATTCATTTCAAAATCTTACTGGACTGCAAGAGTTAGACTTGAACTGTGATTTTGTTCACTTAAGTGGCAATGTCTTGACGCCCGAACTGACTAGGCTCTACGTTCTTACTTGCAAGGAGTGGAAATGGTTAAAATCAAAAGAGGGTGAAGAAGATGTGGGCTCAACAGTATCTTCAAATGTACAATCATTTTGGGGTTCTTGCAACCTGGATGATGAATTTTTTTCGGCAGGTTTCACTCAGTTGGCTCAAGTAAGACAGTTATGGCTGGTTAACGGTAATGTCACATTCCTTCCTGAACGCATGAAAGAATTTCACCACCTGAATGCTCTTGATGTGAGTTACTGCGAGAATCTTCATGAAATTAGAGGGCTTCCACCAAACTTGAAAAGTTTCAGGGCAATAAAGTGCACATCATTGACTTCATTGGGTTCAAGCATGCTGTTAAATCAGCAACTTCACGAGGTGGGAGGGACTGAGTTTATATTTCCAGGAGGAAGAATTCCAGAGTGGTTGGACAAACAAAGCAATGGACCTTCGATCTCTTTCTGGTTTCGTAATAAATTTCCCGCCAAAGTTCTTTGTCTTCTTATTGCACCTGTAATGTGCTCTTCCTTGTTTGTTAGACCCATGGTGTTCATCCATGGAAAAGTTACAAAATGTCTTTCTAATCCTATGAAAACAAAAGTGGAGATGTTGGAATCGGATTACACACATCTCTTTGATCTGCGGAGGTTTCTTTCCCATGGTGCTCTGATGGAAGTGGGTTTAGAAAATGAATGGAAGCATGTGGAGGTTACCTATGAGGGTGTGTTTGAGAGCTCAGTGATTAAAGCCATGGGAATCCATGTAGTGAAAGACAAAAACATCAACATGGAGGATATTCGATATGATGATCCTTACACCAACATAAAAGTAGAGAATCAAGAATGA 3138 0.4034 MAPPRSPAFRYDVFLSFRGEDTRYGFTGNLYKALCNRGIHTFIDDEELQSGEEITPALQKSIEESRIAIVVLSQNYASSSFCLDELVTILHCHTQGLLVIPLFYKVKPSDVRHHRGSYGEAVSNHQKRFKDKKEKVHKWKMALRHVADLSGCHFKEGDGYEYKFIGSVVDEVCHKINPTRLHVTDYPVGLGPQVLEVRKLLNVECGDGFHMIGIHGMGGVGKTTLALALYNLIAVCFDGSCFLQNVTEKSNKHGLEHLQSILLSKILGDKDINIASEHEGISMIHQRLQRKKVLLILDDVDKCEQLQRLVGSPDWFGPGSRVIITTRDTHLLASHQVKTTYEVKTLNKDDALQLLTWKAFKTEHVNPSYVEVLNGVVTYASGLPLVLEVIGSNLFAKGVEQWKSAINQYKRIPNKKILEIMKVSFDALEEEEKSVFLDIACCFKGYKLTEVEIMLRALYDDCMKHHIGVLVEKSLIKVSRGGTVELHDLIKDMGRQIDQKESPKEPGKRKRLWLPKDIIQVLKCNKGTGEIEMVCLDLSPSDRGEVVEWNGMAFQDMENLKILIIRNCKFSKGPKYLPNKLTVLEWWRYPSPCLPYDFNANKLVICKLPDSCFTSFGFHGSSKKFENLTVLKFDYCKHLTRIHDISDLPNLEKLSFKWCESLVSVHNSVGFLTKLKILIAERCEKLRRFLPLNLTSLERLELSYCSSLENFPEILGNMGNIRKLSLLKLPIKELPDSFQNLTGLQELDLNCDFVHLSGNVLTPELTRLYVLTCKEWKWLKSKEGEEDVGSTVSSNVQSFWGSCNLDDEFFSAGFTQLAQVRQLWLVNGNVTFLPERMKEFHHLNALDVSYCENLHEIRGLPPNLKSFRAIKCTSLTSLGSSMLLNQQLHEVGGTEFIFPGGRIPEWLDKQSNGPSISFWFRNKFPAKVLCLLIAPVMCSSLFVRPMVFIHGKVTKCLSNPMKTKVEMLESDYTHLFDLRRFLSHGALMEVGLENEWKHVEVTYEGVFESSVIKAMGIHVVKDKNINMEDIRYDDPYTNIKVENQE 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00581 1045 SUPERFAMILY "Winged helix" DNA-binding domain 415 523 IPR036390 -
Viun4g00581 1045 Gene3D Ribonuclease Inhibitor 532 717 IPR032675 -
Viun4g00581 1045 SUPERFAMILY L domain-like 547 885 - -
Viun4g00581 1045 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 860 IPR044974 GO:0006952
Viun4g00581 1045 Gene3D - 185 341 IPR027417 -
Viun4g00581 1045 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 178 - -
Viun4g00581 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 439 IPR027417 -
Viun4g00581 1045 Gene3D Ribonuclease Inhibitor 718 896 IPR032675 -
Viun4g00581 1045 SMART till_3 10 149 IPR000157 GO:0007165
Viun4g00581 1045 Gene3D - 345 429 IPR042197 -
Viun4g00581 1045 Gene3D - 6 184 IPR035897 -
Viun4g00581 1045 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 151 IPR035897 -
Viun4g00581 1045 PRINTS Disease resistance protein signature 380 394 - -
Viun4g00581 1045 PRINTS Disease resistance protein signature 211 226 - -
Viun4g00581 1045 PRINTS Disease resistance protein signature 692 708 - -
Viun4g00581 1045 PRINTS Disease resistance protein signature 287 301 - -
Viun4g00581 1045 Pfam TIR domain 11 179 IPR000157 GO:0007165
Viun4g00581 1045 Pfam NB-ARC domain 197 415 IPR002182 GO:0043531
Viun4g00581 1045 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Viun4g00581 1045 SMART AAA_5 208 349 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00581 Viun-Chr4 3764939 3768869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00581 3 749 WRKY Transcription Factor Family AT4G12020 30.339 4.54e-77 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00581 - - var:108344036 1328.54