LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g00580	ATGGCGCCTCCAAGGTCCCCTGCATTCAGATATGATGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTTATGGTTTTACTGGCAATCTCTACAAAGCTCTCTGTAACAGAGGAATTCACACTTTCATCGATGATGAGGAGCTTCAGAGCGGGGAGGAAATCACACCAGCACTTCAGAAATCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCAAAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGTCACCATCCTTCACTGCCACACCCAAGGATTGTTGGTTATTCCGCTCTTCTATAAGGTCAAACCTTCTGATGTCAGACACCACAGAGGTAGTTATGGAGAAGCAGTGAGTAACCATCAGAAAAGGTTCAAAGATAAGAAGGAGAAGGTGCATAAATGGAAGATGGCTCTGCGTCATGTAGCTGACTTGTCTGGCTGTCATTTCAAAGAAGGTGATGGATACGAATACAAGTTTATTGGGAGTGTTGTGGACGAGGTCTGCCACAAGATTAATCCAACTCGTTTACATGTTACGGATTACCCTGTTGGACTAGGGCCACAAGTGCTTGAAGTGAGAAAGCTTTTAAATGTGGAATGTGGTGATGGATTCCACATGATAGGGATCCATGGAATGGGTGGTGTAGGAAAAACAACACTCGCTTTAGCACTTTATAATTTGATTGCGGTCTGTTTTGATGGTTCTTGTTTTCTTCAGAACGTGACAGAAAAATCAAACAAACATGGGCTGGAACACCTCCAAAGCATCCTTCTTTCAAAAATACTTGGTGATAAGGACATCAACATAGCAAGTGAACATGAAGGAATTTCAATGATACACCAAAGGTTGCAGAGAAAAAAGGTTCTCTTGATTCTTGACGATGTTGACAAGTGCGAACAGCTACAGAGACTGGTTGGAAGTCCTGATTGGTTTGGTCCCGGCAGCAGGGTCATCATCACAACTCGAGATACACATCTGCTTGCATCTCATCAGGTCAAAACAACATATGAGGTCAAGACATTGAATAAAGATGATGCTCTTCAGTTGCTTACATGGAAAGCTTTCAAAACGGAACATGTTAATCCAAGTTATGTGGAGGTCTTGAATGGTGTAGTAACTTATGCTTCTGGCCTTCCATTGGTTTTGGAAGTAATTGGTTCCAACCTGTTTGCAAAAGGTGTGGAACAGTGGAAATCTGCTATCAATCAATATAAAAGAATTCCAAACAAAAAAATCCTAGAGATAATGAAAGTAAGTTTCGATGCTTTGGAGGAAGAAGAGAAAAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATAAATTGACAGAGGTTGAGATTATGCTTCGAGCTCTTTATGATGACTGCATGAAACATCATATCGGGGTGTTGGTTGAAAAATCTCTCATAAAGGTTAGTCGGGGTGGAACAGTTGAATTGCACGACTTGATTAAGGACATGGGTAGACAAATTGACCAGAAAGAATCACCGAAAGAACCAGGGAAGCGCAAGAGATTATGGTTACCGAAAGATATAATCCAAGTTCTAAAATGCAACAAGGGAACAGGTGAGATTGAAATGGTATGTCTGGATCTCTCCCCATCTGACAGAGGAGAAGTGGTGGAATGGAATGGAATGGCCTTCCAGGACATGGAAAACCTCAAAATACTTATTATTAGAAATTGTAAATTTTCCAAAGGTCCCAAATATCTTCCAAATAAGTTGACAGTGCTGGAATGGTGGAGATATCCTTCACCTTGTTTACCATATGACTTTAATGCCAACAAACTTGTCATATGCAAACTACCTGACAGTTGCTTTACATCATTTGGATTCCATGGCTCATCAAAGAAGTTTGAGAATCTAACCGTCTTGAAATTTGACTACTGCAAACATTTAACACGGATACATGACATATCTGATCTGCCAAACTTGGAGAAACTTTCATTTAAATGGTGTGAAAGTTTAGTTTCAGTTCACAACTCTGTTGGTTTTCTGACTAAACTCAAAATACTAATTGCTGAAAGATGCGAGAAGCTACGAAGATTTCTGCCTCTCAACTTGACTTCTCTTGAAAGACTAGAACTTTCGTATTGTTCCAGTCTTGAGAATTTTCCAGAAATATTGGGAAACATGGGAAACATAAGGAAACTTAGTTTGCTTAAACTTCCCATCAAAGAATTACCAGATTCATTTCAAAATCTTACTGGACTGCAAGAGTTAGACTTGAACTGTGATTTTGTTCACTTAAGTGGCAATGTCTTGACGCCCGAACTGACTAGGCTCTACGTTCTTACTTGCAAGGAGTGGAAATGGTTAAAATCAAAAGAGGGTGAAGAAGATGTGGGCTCAACAGTATCTTCAAATGTACAATCATTTTGGGGTTCTTGCAACCTGGATGATGAATTTTTTTCGGCAGGTTTCACTCAGTTGGCTCAAGTAAGACAGTTATGGCTGGTTAACGGTAATGTCACATTCCTTCCTGAACGCATGAAAGAATTTCACCACCTGAATGCTCTTGATGTGAGTTACTGCGAGAATCTTCATGAAATTAGAGGGCTTCCACCAAACTTGAAAAGTTTCAGGGCAATAAAGTGCACATCATTGACTTCATTGGGTTCAAGCATGCTGTTAAATCAGCAGCAACTTCACGAGGTGGGAGGGACTGAGTTTATATTTCCAGGAGGAAGAATTCCAGAGTGGTTGGACAAACAAAGCAATGGACCTTCGATCTCTTTCTGGTTTCGTAATAAATTTCCCGCCAAAGTTCTTTGTCTTCTTATTGCACCTGTAATGTGCTCTTCCTTGTTTGTTAGACCCATGGTGTTCATCCATGGAAAAGTTACAAAATGTCTTTCTAATCCTATGAAAACAAAAGTGGAGATGTTGGAATCGGATTACACACATCTCTTTGATCTGCGGAGGTTTCTTTCCCATGGTGCTCTGATGGAAGTGGGTTTAGAAAATGAATGGAAGCATGTGGAGGTTACCTATGAGGGTGTGTTTGAGAGCTCAGTGATTAAAGCCATGGGAATCCATGTAGTGAAAGACAAAAACATCAACATGGAGGATATTCGATATGATGATCCTTACACCAACATAAAAGTAGAGAATCAAGAATGA	3141	0.4037	MAPPRSPAFRYDVFLSFRGEDTRYGFTGNLYKALCNRGIHTFIDDEELQSGEEITPALQKSIEESRIAIVVLSQNYASSSFCLDELVTILHCHTQGLLVIPLFYKVKPSDVRHHRGSYGEAVSNHQKRFKDKKEKVHKWKMALRHVADLSGCHFKEGDGYEYKFIGSVVDEVCHKINPTRLHVTDYPVGLGPQVLEVRKLLNVECGDGFHMIGIHGMGGVGKTTLALALYNLIAVCFDGSCFLQNVTEKSNKHGLEHLQSILLSKILGDKDINIASEHEGISMIHQRLQRKKVLLILDDVDKCEQLQRLVGSPDWFGPGSRVIITTRDTHLLASHQVKTTYEVKTLNKDDALQLLTWKAFKTEHVNPSYVEVLNGVVTYASGLPLVLEVIGSNLFAKGVEQWKSAINQYKRIPNKKILEIMKVSFDALEEEEKSVFLDIACCFKGYKLTEVEIMLRALYDDCMKHHIGVLVEKSLIKVSRGGTVELHDLIKDMGRQIDQKESPKEPGKRKRLWLPKDIIQVLKCNKGTGEIEMVCLDLSPSDRGEVVEWNGMAFQDMENLKILIIRNCKFSKGPKYLPNKLTVLEWWRYPSPCLPYDFNANKLVICKLPDSCFTSFGFHGSSKKFENLTVLKFDYCKHLTRIHDISDLPNLEKLSFKWCESLVSVHNSVGFLTKLKILIAERCEKLRRFLPLNLTSLERLELSYCSSLENFPEILGNMGNIRKLSLLKLPIKELPDSFQNLTGLQELDLNCDFVHLSGNVLTPELTRLYVLTCKEWKWLKSKEGEEDVGSTVSSNVQSFWGSCNLDDEFFSAGFTQLAQVRQLWLVNGNVTFLPERMKEFHHLNALDVSYCENLHEIRGLPPNLKSFRAIKCTSLTSLGSSMLLNQQQLHEVGGTEFIFPGGRIPEWLDKQSNGPSISFWFRNKFPAKVLCLLIAPVMCSSLFVRPMVFIHGKVTKCLSNPMKTKVEMLESDYTHLFDLRRFLSHGALMEVGLENEWKHVEVTYEGVFESSVIKAMGIHVVKDKNINMEDIRYDDPYTNIKVENQE	1046

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g00580	1046	SUPERFAMILY	"Winged helix" DNA-binding domain	415	523	IPR036390	-
	Viun4g00580	1046	PRINTS	Disease resistance protein signature	380	394	-	-
	Viun4g00580	1046	PRINTS	Disease resistance protein signature	211	226	-	-
	Viun4g00580	1046	PRINTS	Disease resistance protein signature	692	708	-	-
	Viun4g00580	1046	PRINTS	Disease resistance protein signature	287	301	-	-
	Viun4g00580	1046	Gene3D	-	185	341	IPR027417	-
	Viun4g00580	1046	Pfam	TIR domain	11	179	IPR000157	GO:0007165
	Viun4g00580	1046	Gene3D	-	345	429	IPR042197	-
	Viun4g00580	1046	FunFam	Disease resistance protein (TIR-NBS-LRR class)	7	178	-	-
	Viun4g00580	1046	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	177	439	IPR027417	-
	Viun4g00580	1046	Gene3D	Ribonuclease Inhibitor	532	897	IPR032675	-
	Viun4g00580	1046	SMART	till_3	10	149	IPR000157	GO:0007165
	Viun4g00580	1046	Gene3D	-	6	184	IPR035897	-
	Viun4g00580	1046	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	151	IPR035897	-
	Viun4g00580	1046	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	11	861	IPR044974	GO:0006952
	Viun4g00580	1046	Pfam	NB-ARC domain	197	415	IPR002182	GO:0043531
	Viun4g00580	1046	SUPERFAMILY	L domain-like	547	889	-	-
	Viun4g00580	1046	ProSiteProfiles	TIR domain profile.	9	176	IPR000157	GO:0007165
	Viun4g00580	1046	SMART	AAA_5	208	349	IPR003593	GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g00580	Viun-Chr4	3764939	3768869	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g00580	3	749	WRKY Transcription Factor Family	AT4G12020	30.339	4.48e-77	276

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g00580	-		-	var:108344036	1323.92