LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g00579	ATGGCAACTCCAAGTTCCCGTAGATTCACGTACGATGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTTATGATTTCACTGGTAATCTGTACAAAGCTCTGTGTGACAGGGGAATTCACACTTTCATCGATGATGAGGAGCTTCAGAGTGGAGAGGAAATCACAGCAGCACTTGTGAAGGCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGCAACCATCCTTCACTGCCAGAGGAAAGGGCTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTCTTATGTAAGACATCAGAAAGGTAGCTATGAAGAAGCATTGGCTAAGCATCAAAAGAGGTTCAAAGCGCAGAAGGAGAAGTTACATAAATGGAAGATGGCTCTGCGTCAGGTTGCTGACTTCTCTGGCTATCACTTCAAAGATGGAGATGAATACCAGTACGAGTTTATTGGGAGGATTGTTGAACGGGTTTGTAGGGAGATTAATCGTGCTCCTTTATATGTTGCGAATTACCCAGTTGGCCTACTGTCACAGGTGCTGAAAGTCAAGAAACTTTTGGATGTTGGATCTGATGATGTTCGCATGATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTTCTGTAGCAGTGTATAATTTGATTGCTAATGATTTTGATTGTTTATGCTTTCTTCAAAATGTAAGAGAAGAATCAAATAAACATGGGTTAAAACACCTCCAGACCATCCTTCTTTCAAAAACACTTGGAGAAAAGCACATCAACTTAGCTAGTGAACATGAAGGAATTTCAATGATACAACAAAGGTTGCAGCGAAAGAAGGTTCTCTTGATTCTTGATGACGTTGACAGGTGCGAACAGTTACAAGCACTGGCTGGAAGCCCTGATTGGTTTGGTCCCGGCAGCAGGGTCATCATCACAACTAGAGATACACAACCGCTTGCATCTCATCAGGTCAAAGGAACATATGAGGTCAAGACATTGAATGCAAAGGACGCTCTTCAGTTGCTTACATGGAAAGCTTTCAAAACGGAACAGGTTGATCCAAGTTACATGGAGGTTTTGAATGATGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAACCTGTTTGCAAAAAGTGTGGAAGAGTGGAAATCTGCTATCAATCAATATAAAAGAATTCCTAACAATCAAATCCTAAAGATACTTAAAGTAAGCTTCGATGCTTTGGAGGAAGAAGAGAAGTGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATAAAATGACAAAGGTTGAGGTTATGCTTCGTGCTCTCTACGATGACTGCATGAAACATCATATTGGGGCGCTGGTTCAAAAATCTCTCATTAAGATTTATTACTCTACTACAATTGTAATGCATGATTTAATTTGGGACATGGGTAAACAAATTGACCAGAGAGAATCATCGAAAAAGCCAGGAAAGGGAAGGAGATTATGGTTACCTAAAGATATAATTCAAGTTTTAAGGGACAACACAGGAACTAGGGAAACTGAAATCCTATGCCTGGATTTGTCTATATCTGAGAAAGAAGAAACGCTAGAATGGAATGCCAACGCCTTCAAAAGGATGAAAAACCTTAAAATACTTATCATTAGAAATGGTAAATTTTCCAAAGGTCCCAATTATTTTCCAGAAAGTTTGAGAATACTGGAATGGCATGGATACCCTTCAAATTGTTTACCTTCAAATTTTCATCCAAACAAACTCGTGACATGCAAGTTGCCTAACAGTCCTTTTACGTCATTTGGGTTCAATGGTTCATCAAAGAAGTTCGAGAATTTAACCAACTTGAATTTTGACAATTGCCAACTTTTAACACGGATGCCTGACCTATCTGATCTCCCAAATCTGGAGAAACTTTACTTTGAACAGTGTGAGAGTTTAATTGCACTTGACGACTCAATTGGTTTTCTGAATAAACTTAAAATATTGAAAGCTCAACGTTGCAAAAAACTTCGGAGATTTCCACCTCTCAACTTGCCCTCTCTTAAAAACCTTGAACTTTCATTTTGTTCAAGTCTTGAGAATTTTCCAGAAATATTAGGAGAGATGGGAAATATTAGGGAACTTAGTTTGTCTAAACTTGCCATAAAAGAGTTGCCAGTTTCATTTCAAAATCTTACTGGACTCCATCGGTTATTCGTGGGATGTTATTTTCTTCAGTTAAATAGCAGTGTCTTGATATCTTCGTTGACTACCTTTCGCGCTTTTAGATGCAAGGAGTGGAAATGGATAAATTCAAAAGATGGCGAAGAAGTGGGCTCAACGGTATCTTCAAATCTACGTTCGTTTGGGGTTGTGGATTGCGACCTGAATGATGATATTTTTTCAGCAGGTTTCACGCAGTTGACCACAGTTAAGTCTTTAAACCTATCGAGAACTAATATCACATTCCTTCCTGAGTGCATCAAAGAATTTCACCACCTGAATGATCTTGATGTGAGTGATTGCAAGCGTCTAGAGGAAATTAGAGGGATTCCACCAAACTTGAGAAAGTTCAGTGCGAAAGACTGTAGATCATTGATTACCTCGGGTTCAAGCATGTTGTTAAATCAGCAACTTCAAGAGGCTGGAAAGACTGATTTTGTGCTTCCAGGAGGAAGTATTCCCGAGTGGTTGGATAGAGAAAGCAGGGGACCTTCAATTTCTTTCTGGTTTCGGAATCAATTCCCTCCCAAAGTCCTTTGTTTCCTTATTGCACCTGTACGGTATGATGTCCTTTTTCACTTGGTTAGACCCGTGGTGTTAATCAACGGCAAAGTTCAAGAATATAAACCTAGTTATCTTAAGGATGTGATAATGGTGGAATTGGATCATATACACCTCTTTGATCTACATGTGTTACCGTTCTCTGAAGATCTGATGAAAGTGGCTTCAGAAAAGGAGTGGAAGCATGTGGAGATTACATACCAAGGTTTGTTTGATACCTCATTCATCAAATCAATGGGAATCCATATAGTCAAATCGGAAAGAAGGGGCATGGAGGACATTAGATATGATGATCCTAACACCACCACAAAAGTGTGCCCATGCAACTTCTCTGTAACTTTTCTTCCTTTCTTTTTTCGCTTTTTGTTTGCTCTCATTTTATTTTTGACATTGTTGATCCATTTGGATTTTGTAAATCTTTCATCACTTTGCGTTTTCAATCTCAGGTTTTAG	3261	0.3944	MATPSSRRFTYDVFLSFRGEDTRYDFTGNLYKALCDRGIHTFIDDEELQSGEEITAALVKAIEESRIAIVVLSHNYASSSFCLDELATILHCQRKGLLVIPVFYKVDPSYVRHQKGSYEEALAKHQKRFKAQKEKLHKWKMALRQVADFSGYHFKDGDEYQYEFIGRIVERVCREINRAPLYVANYPVGLLSQVLKVKKLLDVGSDDVRMIGIHGMGGLGKTTLSVAVYNLIANDFDCLCFLQNVREESNKHGLKHLQTILLSKTLGEKHINLASEHEGISMIQQRLQRKKVLLILDDVDRCEQLQALAGSPDWFGPGSRVIITTRDTQPLASHQVKGTYEVKTLNAKDALQLLTWKAFKTEQVDPSYMEVLNDVVTYASGLPLALEVIGSNLFAKSVEEWKSAINQYKRIPNNQILKILKVSFDALEEEEKCVFLDIACCFKGYKMTKVEVMLRALYDDCMKHHIGALVQKSLIKIYYSTTIVMHDLIWDMGKQIDQRESSKKPGKGRRLWLPKDIIQVLRDNTGTRETEILCLDLSISEKEETLEWNANAFKRMKNLKILIIRNGKFSKGPNYFPESLRILEWHGYPSNCLPSNFHPNKLVTCKLPNSPFTSFGFNGSSKKFENLTNLNFDNCQLLTRMPDLSDLPNLEKLYFEQCESLIALDDSIGFLNKLKILKAQRCKKLRRFPPLNLPSLKNLELSFCSSLENFPEILGEMGNIRELSLSKLAIKELPVSFQNLTGLHRLFVGCYFLQLNSSVLISSLTTFRAFRCKEWKWINSKDGEEVGSTVSSNLRSFGVVDCDLNDDIFSAGFTQLTTVKSLNLSRTNITFLPECIKEFHHLNDLDVSDCKRLEEIRGIPPNLRKFSAKDCRSLITSGSSMLLNQQLQEAGKTDFVLPGGSIPEWLDRESRGPSISFWFRNQFPPKVLCFLIAPVRYDVLFHLVRPVVLINGKVQEYKPSYLKDVIMVELDHIHLFDLHVLPFSEDLMKVASEKEWKHVEITYQGLFDTSFIKSMGIHIVKSERRGMEDIRYDDPNTTTKVCPCNFSVTFLPFFFRFLFALILFLTLLIHLDFVNLSSLCVFNLRF	1086

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g00579	1086	SMART	till_3	10	149	IPR000157	GO:0007165
	Viun4g00579	1086	Gene3D	-	5	183	IPR035897	-
	Viun4g00579	1086	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	152	IPR035897	-
	Viun4g00579	1086	Gene3D	Ribonuclease Inhibitor	519	715	IPR032675	-
	Viun4g00579	1086	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	179	438	IPR027417	-
	Viun4g00579	1086	SUPERFAMILY	"Winged helix" DNA-binding domain	415	521	IPR036390	-
	Viun4g00579	1086	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	11	859	IPR044974	GO:0006952
	Viun4g00579	1086	PRINTS	Disease resistance protein signature	210	225	-	-
	Viun4g00579	1086	PRINTS	Disease resistance protein signature	286	300	-	-
	Viun4g00579	1086	PRINTS	Disease resistance protein signature	691	707	-	-
	Viun4g00579	1086	PRINTS	Disease resistance protein signature	379	393	-	-
	Viun4g00579	1086	Pfam	TIR domain	11	172	IPR000157	GO:0007165
	Viun4g00579	1086	Gene3D	Ribonuclease Inhibitor	716	889	IPR032675	-
	Viun4g00579	1086	FunFam	Disease resistance protein (TIR-NBS-LRR class)	7	178	-	-
	Viun4g00579	1086	SUPERFAMILY	L domain-like	546	877	-	-
	Viun4g00579	1086	Gene3D	-	344	428	IPR042197	-
	Viun4g00579	1086	Gene3D	-	184	338	IPR027417	-
	Viun4g00579	1086	ProSiteProfiles	TIR domain profile.	9	176	IPR000157	GO:0007165
	Viun4g00579	1086	Pfam	NB-ARC domain	196	412	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g00579	Viun-Chr4	3750413	3754395	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g00579	11	852	WRKY Transcription Factor Family	AT4G12020	29.977	5.03e-80	286

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g00579	-		-	var:108344036	1414.82