Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00578 ATGGCAACTCCAAGTTCCCGTAGATTCACGTACGATGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTTATGATTTCACTGGTAATCTGTACAAAGCTCTGTGTGACAGGGGAATTCACACTTTCATCGATGATGAGGAGCTTCAGAGTGGAGAGGAAATCACAGCAGCACTTGTGAAGGCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGCAACCATCCTTCACTGCCAGAGGAAAGGGCTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTCTTATGTAAGACATCAGAAAGGTAGCTATGAAGAAGCATTGGCTAAGCATCAAAAGAGGTTCAAAGCGCAGAAGGAGAAGTTACATAAATGGAAGATGGCTCTGCGTCAGGTTGCTGACTTCTCTGGCTATCACTTCAAAGATGGAGATGAATACCAGTACGAGTTTATTGGGAGGATTGTTGAACGGGTTTGTAGGGAGATTAATCGTGCTCCTTTATATGTTGCGAATTACCCAGTTGGCCTACTGTCACAGGTGCTGAAAGTCAAGAAACTTTTGGATGTTGGATCTGATGATGTTCGCATGATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTTCTGTAGCAGTGTATAATTTGATTGCTAATGATTTTGATTGTTTATGCTTTCTTCAAAATGTAAGAGAAGAATCAAATAAACATGGGTTAAAACACCTCCAGACCATCCTTCTTTCAAAAACACTTGGAGAAAAGCACATCAACTTAGCTAGTGAACATGAAGGAATTTCAATGATACAACAAAGGTTGCAGCGAAAGAAGGTTCTCTTGATTCTTGATGACGTTGACAGGTGCGAACAGTTACAAGCACTGGCTGGAAGCCCTGATTGGTTTGGTCCCGGCAGCAGGGTCATCATCACAACTAGAGATACACAACCGCTTGCATCTCATCAGGTCAAAGGAACATATGAGGTCAAGACATTGAATGCAAAGGACGCTCTTCAGTTGCTTACATGGAAAGCTTTCAAAACGGAACAGGTTGATCCAAGTTACATGGAGGTTTTGAATGATGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAACCTGTTTGCAAAAAGTGTGGAAGAGTGGAAATCTGCTATCAATCAATATAAAAGAATTCCTAACAATCAAATCCTAAAGATACTTAAAGTAAGCTTCGATGCTTTGGAGGAAGAAGAGAAGTGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATAAAATGACAAAGGTTGAGGTTATGCTTCGTGCTCTCTACGATGACTGCATGAAACATCATATTGGGGCGCTGGTTCAAAAATCTCTCATTAAGATTTATTACTCTACTACAATTGTAATGCATGATTTAATTTGGGACATGGGTAAACAAATTGACCAGAGAGAATCATCGAAAAAGCCAGGAAAGGGAAGGAGATTATGGTTACCTAAAGATATAATTCAAGTTTTAAGGGACAACACAGGAACTAGGGAAACTGAAATCCTATGCCTGGATTTGTCTATATCTGAGAAAGAAGAAACGCTAGAATGGAATGCCAACGCCTTCAAAAGGATGAAAAACCTTAAAATACTTATCATTAGAAATGGTAAATTTTCCAAAGGTCCCAATTATTTTCCAGAAAGTTTGAGAATACTGGAATGGCATGGATACCCTTCAAATTGTTTACCTTCAAATTTTCATCCAAACAAACTCGTGACATGCAAGTTGCCTAACAGTCCTTTTACGTCATTTGGGTTCAATGGTTCATCAAAGAAGTTCGAGAATTTAACCAACTTGAATTTTGACAATTGCCAACTTTTAACACGGATGCCTGACCTATCTGATCTCCCAAATCTGGAGAAACTTTACTTTGAACAGTATGCAAGGAGTGGAAATGGATAA 1995 0.3995 MATPSSRRFTYDVFLSFRGEDTRYDFTGNLYKALCDRGIHTFIDDEELQSGEEITAALVKAIEESRIAIVVLSHNYASSSFCLDELATILHCQRKGLLVIPVFYKVDPSYVRHQKGSYEEALAKHQKRFKAQKEKLHKWKMALRQVADFSGYHFKDGDEYQYEFIGRIVERVCREINRAPLYVANYPVGLLSQVLKVKKLLDVGSDDVRMIGIHGMGGLGKTTLSVAVYNLIANDFDCLCFLQNVREESNKHGLKHLQTILLSKTLGEKHINLASEHEGISMIQQRLQRKKVLLILDDVDRCEQLQALAGSPDWFGPGSRVIITTRDTQPLASHQVKGTYEVKTLNAKDALQLLTWKAFKTEQVDPSYMEVLNDVVTYASGLPLALEVIGSNLFAKSVEEWKSAINQYKRIPNNQILKILKVSFDALEEEEKCVFLDIACCFKGYKMTKVEVMLRALYDDCMKHHIGALVQKSLIKIYYSTTIVMHDLIWDMGKQIDQRESSKKPGKGRRLWLPKDIIQVLRDNTGTRETEILCLDLSISEKEETLEWNANAFKRMKNLKILIIRNGKFSKGPNYFPESLRILEWHGYPSNCLPSNFHPNKLVTCKLPNSPFTSFGFNGSSKKFENLTNLNFDNCQLLTRMPDLSDLPNLEKLYFEQYARSGNG 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00578 664 SMART till_3 10 149 IPR000157 GO:0007165
Viun4g00578 664 Gene3D Ribonuclease Inhibitor 523 662 IPR032675 -
Viun4g00578 664 Gene3D - 344 428 IPR042197 -
Viun4g00578 664 SUPERFAMILY "Winged helix" DNA-binding domain 415 521 IPR036390 -
Viun4g00578 664 Pfam NB-ARC domain 196 412 IPR002182 GO:0043531
Viun4g00578 664 Pfam TIR domain 11 172 IPR000157 GO:0007165
Viun4g00578 664 Gene3D - 184 338 IPR027417 -
Viun4g00578 664 Gene3D - 5 183 IPR035897 -
Viun4g00578 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 438 IPR027417 -
Viun4g00578 664 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 657 IPR044974 GO:0006952
Viun4g00578 664 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Viun4g00578 664 SUPERFAMILY L domain-like 546 656 - -
Viun4g00578 664 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 178 - -
Viun4g00578 664 PRINTS Disease resistance protein signature 622 638 - -
Viun4g00578 664 PRINTS Disease resistance protein signature 286 300 - -
Viun4g00578 664 PRINTS Disease resistance protein signature 379 393 - -
Viun4g00578 664 PRINTS Disease resistance protein signature 210 225 - -
Viun4g00578 664 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00578 Viun-Chr4 3750412 3753543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00578 11 656 WRKY Transcription Factor Family AT4G12020 29.580 2.41e-69 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00578 - - var:108344036 1019.99