Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00575 ATGTTACATGGTTATGTAATAAATAAGTGCATATTCATTGAAGTTTGGTCCAGGAGTGCAACTAAAACTTTGTTGTTAATGGCTGTAATATCACCTTCCCAAGCATTCAGCTACGATGTGTTCCTGAATTTCAGAGGCTCAGACACACGCCAAGGTTTTACTGGCTATCTCAACAAAGCTCTTCATGACAGTGGAATCCACGTTTTCATTGATGATGAGGGCCTTCAGAGTGGAAAGATAATAACACCAGAACTCAAGGAGGCAATTGAAAAGTCCAGGATTGCGATTCCCGTGCTCTCTACAAACTATGCTTCTTCTTCCTTCTGTTTAGATGAGCTTGCAGTCATTCTTGACTGCTCCAGAAGGAATGGACTCTTGGTGTTGCCTGTCTTTTACAAAGTGCCTCCTCGTCATGTCAGACACCAGCAAGGAAGTTATGGAGAAGCATTGGCCAGACTAGAGAAAAGGCTTCTTGAGGAACATAACATGGAGAATTGGAAGATGGCACTGAAAGAAGTAGCTGGCCATTCTGGCTTTCATTTCGAGGATGGAAAGGAATATGAGCACAAGCTTGTTGAGAAGATTGTTGAGCGTGTCTTCAGCTTCATTAATAATGGGGAAGAAAGATTGCATGTTGCAGATTACCCAGTTGGACTAGGATCACAGGTGCTAGAAATAAGGAAGCTTTTGGATGCTAGAAAAAACGATGCTAGCGTCAACATGATAGGGATCCACGGAATGGGCGGTGTAGGGAAATCAACACTTGCTCGCGCAGTTTATAATTTGATCACTGATCAATTTGAAGGTTCGTGTTTTCTCCAAAATGTAAGAGAAGAATCAAACAAACATGGGTTAAAACACCTTCAAAGCATCATTCTTTCACAGGTACTTGGAATGAAAGAAATCAACTTAGCAAGTGAGCAACAAGGAATTTCAATAATAAAAAATAGGCTCAAGCGAAAGAAGGTTCTCTTAATTCTGGATGACGTAGACCAGCACAAGCAATTACAAGGAATTGCAGGAAGTTCTGATTGGTTTGGTCCCGGCAGCATAGTCATCATCACCACTCGCGACAAACAACTTCTAGCATCTCATGAGGTTAAAACAACGCATGAGATGAAGGAATTGAATAAGGAAGATGCTCTTAAGTTGCTTAAATTCAAAGCTTTTAAAAATGGAGAAGTTTATCCAAGTTACACGGAGGTATTGGATCAGGTAGTAACTTATGCTTCTGGTATTCCACTGGCTTTGGAAGTCATAGGTTCAAACTTGTTTGGAAAAAGTGTACAAGAATGGGAATCTGCTATCAAACAATATAAAAGAATTCCTAATAATCAAATCCGAGAGATACTTGAAGTAAGCTTTGATTCATTGGGAGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGGTATAAATTGTGGGAGATTGAAGAGAAACTTTGTGCTCTTTATGATAACTGCATGAAATACCATATTGGGGTGCTAATTGAAAAGTCTCTCATAAAGATTAGTCATGATGAAAGAGTTACATTTCATGACTTGATCGAGGACATGGGTAAAAAAATTGACCATCAGCAATCACCGAGAGAGCCAGGGAAGCGCAGGAGATTATGGTTACATGAAGATATAATTCAAGTTCTGAAAGACAACTCGGTGAGTGACTGA 1680 0.3976 MLHGYVINKCIFIEVWSRSATKTLLLMAVISPSQAFSYDVFLNFRGSDTRQGFTGYLNKALHDSGIHVFIDDEGLQSGKIITPELKEAIEKSRIAIPVLSTNYASSSFCLDELAVILDCSRRNGLLVLPVFYKVPPRHVRHQQGSYGEALARLEKRLLEEHNMENWKMALKEVAGHSGFHFEDGKEYEHKLVEKIVERVFSFINNGEERLHVADYPVGLGSQVLEIRKLLDARKNDASVNMIGIHGMGGVGKSTLARAVYNLITDQFEGSCFLQNVREESNKHGLKHLQSIILSQVLGMKEINLASEQQGISIIKNRLKRKKVLLILDDVDQHKQLQGIAGSSDWFGPGSIVIITTRDKQLLASHEVKTTHEMKELNKEDALKLLKFKAFKNGEVYPSYTEVLDQVVTYASGIPLALEVIGSNLFGKSVQEWESAIKQYKRIPNNQIREILEVSFDSLGEEEKSVFLDIACCFKGYKLWEIEEKLCALYDNCMKYHIGVLIEKSLIKISHDERVTFHDLIEDMGKKIDHQQSPREPGKRRRLWLHEDIIQVLKDNSVSD 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00575 559 SMART AAA_5 238 379 IPR003593 GO:0016887
Viun4g00575 559 FunFam Disease resistance protein (TIR-NBS-LRR class) 34 205 - -
Viun4g00575 559 Pfam NB-ARC domain 226 455 IPR002182 GO:0043531
Viun4g00575 559 Pfam TIR domain 38 200 IPR000157 GO:0007165
Viun4g00575 559 Gene3D - 32 209 IPR035897 -
Viun4g00575 559 SUPERFAMILY Toll/Interleukin receptor TIR domain 34 179 IPR035897 -
Viun4g00575 559 PRINTS Disease resistance protein signature 241 256 - -
Viun4g00575 559 PRINTS Disease resistance protein signature 317 331 - -
Viun4g00575 559 PRINTS Disease resistance protein signature 410 424 - -
Viun4g00575 559 ProSiteProfiles TIR domain profile. 36 203 IPR000157 GO:0007165
Viun4g00575 559 SMART till_3 37 176 IPR000157 GO:0007165
Viun4g00575 559 Gene3D - 211 371 IPR027417 -
Viun4g00575 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 469 IPR027417 -
Viun4g00575 559 SUPERFAMILY "Winged helix" DNA-binding domain 446 553 IPR036390 -
Viun4g00575 559 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 38 552 IPR044974 GO:0006952
Viun4g00575 559 Gene3D - 375 459 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00575 Viun-Chr4 3732076 3734311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00575 217 554 WRKY Transcription Factor Family AT5G45050 33.918 3.02e-51 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00575 - - vra:106770853 825.854