Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00574 ATGTTTTCCTCTTCCTTAACCTACGATGTGTTCCTCAGCTTCAGAGGGGAAGACGCACTCCACGGTTTCACCGGCAATCTCTACAAAGCTCTCTGTGACAGGGGAATTCACACCTTCATCGATGATGATGACCTTGAGAGTGGAGAGGAAATCTCACCAGCACTTCTGAAAGTAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCAAAACTATGCTTCTTCCTGTTTCTGCTTGGATGAACTTGCAGTCATCCTTAACTGCAAGAATAAAGGGCTACATGTTATACCGGTATTTTATAAGGTGGATCCTTCAGACGTGAGACACCAGAAAGGGAGTTATGGAGAAGCATTGACTAAGCATCAGATAAGATTCAAAGATATGGAGAAGGTGCAGAAATGGAAGATGGCTCTGCGTCAAGTAGCTAACTTGTCTGGCTATCATTTCGAAGACGGAGTTGGATATGAATACAAGTTTATTAAGAGAATTGCTGAGGATGTCAAGCACAAGATTATTCGTGATTCTTTTACACATGTTTCGGATTACCCAATTGGACTAGACTCACAAGTGCTAGAAGTAAGGAAAGTTTTGGAGTTTGGAACTGAGGATGGTGTTCACATGATAGGAATCCACGGGATGGGTGGGATAGGAAAATCAACACTTGCTCGAGCTGTCTACAATGATTTAATTGGTGAGAATTTTGATGGATTGTGTTTTCTTGAAAACGTGAGAGAAAACACAAACAAACATGGGTTAAAACACCTGCAAAGCATCCTTCTATCACAGATATTAGGAGATAAGGACATCTACTTCACAAGTATGCAACAAGGAATTTCTACGATAAAGTGTAGGTTGAAGATGAAGAAGGTTCTCTTGATTCTGGATGATGTTGACAAGCCCGAGCAATTAGAAGCAGTTGCTGGAGGATGTGACTGGTTTGGTCCTGGCAGCAGAATCATCATCACAACTCGGAACAAACAATTGTTGGAAAACCATAGAGTTACTATGACATATGAGGTGAAGGAATTGAATAATAATGATGCTCTTCAGCTGCTTAAATGGAAAGCTTTCAGGAATGTAAAGGTTGATCCAGAGTATGAGTTAGTCTTGAATAGTCTTTTAACTTATGCTTCTGGCCTTCCACTGGCTTTAGAAGTAATAGGAGGCAGCTTGGTCGGAAAAAGTATAGAAGGATGGAAGACCACTGTCAAACAATATGAAATGATTCCCAAAATGGAAATCCTAAGTATACTTAAAGTAAACTTTGATGCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGATATTTCTCGTTTCTTAAATGTATATGCGCCGACAGAGGTTGAAGATATACTTAATGCTTGTTATGGTCGTAGCATGAAACATCACATTGGAATGCTGGTTGAAAAATCTCTGTTGAAGTATGATTATTTTGATAATAGACTTACAATGCATGACTTGGTAAGGGACATGTGTATAAGCATTGCCTGGGAGGAATTACGGAAAGAGCCGGGGAAGAACAGTGGATTATGGTTACATAAAGATGTGATTCATGTTTCGAATAACACTAGAATAAAAGGATTGAATGCAAGCAGCTTCAAGAGGATGAAAACCCTCCAAAAACTTCATAAAAAATTTCAGTTTTTCAATCATTTTCTTCGAAGTTCGAGAGCATTGATATGGTTCAGATTTTCTTCAAATTGTTTACCATCTGCGTTGGATAACTTATTGAAGAAGTTCGAGAATCTAACCGTCATGAGTTTTGACGACTGCAAAATTTTGACGCACATTCCTGATGTATCTGATCTCCCAAATTTGAAGGAACTTTCATTTAAAGAGTGTGAGAATTTAATTACAGTTCACGACTCAGTTGGTTTTCTGACTAAACTTAAAATATTGAGGGTTGTTGGTTGCAGCAAGCTTATTAGTTTTCCACCTCTCAACTTAAACTCTCTCGAAAGACTAGAACTTTCAAATTGTTCCAGTCTTGAGAACTTTCAGAGATTTACCACAGAATGGGAATCTGCTTTAAATCAATATGATTCTGTTGGACTGGAGTCACGTTCAGATGCATTCAGCTACGATGTGTTCCTCAGCTTCAGAGGCTTAGACACACGCTATGGTTTTACGGGCTATCTCTACAAAGCTCTTCATGACAGTGGAATCCACACTTTCATTGCTGATGAAAACCTTCAGAGAGGAGAGGAAATTACACCAACAACTGTGAAAGCAATTAAAGAGTCCAGGATTGCTATCACTGTGCTTTCTGTAAACTATGCTTCTTCCACCTGTTGCTTTGATGAACTTGCAACCATTCTTGACTGCCTTAAGAGAAAAAGACTTCTGGTTTTACCAGTCTTTTATTATGTGGATCCTACACTGGTGCAATTGCAGAAAGACAGTTTTAGAGAAGCCTTGACTAAACATGAGAAGAGGCTCAAGCATGACATGGAAAAGTTGTTGAAATGGAAGATGCTTCTTCATCAAGTAGCTAAGTTGTTTTTCTTTCATATCGACCATGGGAATGGATATGAATATGAGTTTATTGGGAAGATTGTGGAGTGGGTCTCCAAGAAGATTAATCCTGGTCATTACCCAGTTGGAATAGAGTCAAAAGTGCAAGAAGTAATGAAACTTTTGGATGTTGGATGTGATGGTGGTGTCCACATGATAGGGATTCATGGAATTGGCGGGGTTGGAAAATCAACTCTTGCCAAAGAAGTTTATAATGATTTGATTTCGTACAAGTTTGATGCTTCATGTTTTATTGAAAACGTGAGAGAAAAATCAAACAAGCATGGGTTACAATATCTTCAAAGCATCATTCTTCTGAATTTACTTGGAGAGAAGGACATGAAGTTAACAAGTGTGCAACAAGGGATTTCAGTGATACAACGTAGGCTCCAGAAAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAAGGAGGAGCAATTGCAGGCAGTTGTTGGAAGAGCTGATTGGTTTGGTCCTGGCAGCAGAGTCATAATCACAACACGAGATGAACAGCTGTTAGCCTCCCATAATGTTCAAACAACTTATGAGGTGAAGGGATTAAATAACGATGAGGCTCTTCAATTGCTTAAATGGAAAGCTTTTAAAAAGCATTACTTTGATCCGAGTTATGAGGAGCTCCTGAATCATGTAGTAACTTTTGCTGCTGGCATTCCATTAGCATTGGAAGTAATAGGTTCCAACTTGTATGGAAAAAGTGTAGAAGAATGGAAACCAGTCATCCATAAATTAAAAAAATGTCCTAATAATCCGGTTGAAACAATACTTAAAGCAAGCTTTGATTCTTTGGAGGAAAAAGAAAGGAGTGTTTTTCTTGACTTTGCTTGTTGCTTCAAAGGATATGAATTGGCAGAGGTCGAAGATATACTTCAAGCTCAGTATGGTCAGAACATGAAGTGTTACATTGACATATTGGTTGACAAATCTCTAGTAAAGCTTATTCATGGTACAAAACCTTGTTATGATAGAGTTACATTGCATGACTTGATTGAGGACATGGGTAAAGATATTGTCCAACAGGAATCATTGTTAGAGCCAGGTCAGCGTAGCAGGTTATGGTTACTGGAAGATGTTAGAGAAGTTTTAGAAAACAACAGGGGAACTAACAAAATTGAAATCATATGTCTGGATTTCCCCATATTTGATCAAGAAGAAGGAGTAGAATGGAATGGAAAGGCCTTCCAGAATATGCAGAACCTCAGAACACTTATTATTAGAAATGGTAGTTTTTCGAAAGGTCCAGAATATCTACCAGATAATTTGAGAGTGCTTGAATGGTGGAGATATCCGTCAAATAGTTTACCATCTGATTTTCATCCAAAGGAACTTGCCATATGCAAGTTACCCTGCAGTAGTATTTCGACAATTGAGTTGACAAACTTATTGAAGAAGTCGGTGAATCTAAGAGTTTTTAAATTTTCAAATGCAAATGTTTAA 3975 0.3836 MFSSSLTYDVFLSFRGEDALHGFTGNLYKALCDRGIHTFIDDDDLESGEEISPALLKVIEESRIAIVVLSQNYASSCFCLDELAVILNCKNKGLHVIPVFYKVDPSDVRHQKGSYGEALTKHQIRFKDMEKVQKWKMALRQVANLSGYHFEDGVGYEYKFIKRIAEDVKHKIIRDSFTHVSDYPIGLDSQVLEVRKVLEFGTEDGVHMIGIHGMGGIGKSTLARAVYNDLIGENFDGLCFLENVRENTNKHGLKHLQSILLSQILGDKDIYFTSMQQGISTIKCRLKMKKVLLILDDVDKPEQLEAVAGGCDWFGPGSRIIITTRNKQLLENHRVTMTYEVKELNNNDALQLLKWKAFRNVKVDPEYELVLNSLLTYASGLPLALEVIGGSLVGKSIEGWKTTVKQYEMIPKMEILSILKVNFDALEEEEKSVFLDISRFLNVYAPTEVEDILNACYGRSMKHHIGMLVEKSLLKYDYFDNRLTMHDLVRDMCISIAWEELRKEPGKNSGLWLHKDVIHVSNNTRIKGLNASSFKRMKTLQKLHKKFQFFNHFLRSSRALIWFRFSSNCLPSALDNLLKKFENLTVMSFDDCKILTHIPDVSDLPNLKELSFKECENLITVHDSVGFLTKLKILRVVGCSKLISFPPLNLNSLERLELSNCSSLENFQRFTTEWESALNQYDSVGLESRSDAFSYDVFLSFRGLDTRYGFTGYLYKALHDSGIHTFIADENLQRGEEITPTTVKAIKESRIAITVLSVNYASSTCCFDELATILDCLKRKRLLVLPVFYYVDPTLVQLQKDSFREALTKHEKRLKHDMEKLLKWKMLLHQVAKLFFFHIDHGNGYEYEFIGKIVEWVSKKINPGHYPVGIESKVQEVMKLLDVGCDGGVHMIGIHGIGGVGKSTLAKEVYNDLISYKFDASCFIENVREKSNKHGLQYLQSIILLNLLGEKDMKLTSVQQGISVIQRRLQKKKVLLILDDVDKEEQLQAVVGRADWFGPGSRVIITTRDEQLLASHNVQTTYEVKGLNNDEALQLLKWKAFKKHYFDPSYEELLNHVVTFAAGIPLALEVIGSNLYGKSVEEWKPVIHKLKKCPNNPVETILKASFDSLEEKERSVFLDFACCFKGYELAEVEDILQAQYGQNMKCYIDILVDKSLVKLIHGTKPCYDRVTLHDLIEDMGKDIVQQESLLEPGQRSRLWLLEDVREVLENNRGTNKIEIICLDFPIFDQEEGVEWNGKAFQNMQNLRTLIIRNGSFSKGPEYLPDNLRVLEWWRYPSNSLPSDFHPKELAICKLPCSSISTIELTNLLKKSVNLRVFKFSNANV 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00574 1324 ProSiteProfiles TIR domain profile. 693 861 IPR000157 GO:0007165
Viun4g00574 1324 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Viun4g00574 1324 Pfam TIR domain 8 171 IPR000157 GO:0007165
Viun4g00574 1324 Pfam TIR domain 695 861 IPR000157 GO:0007165
Viun4g00574 1324 SUPERFAMILY "Winged helix" DNA-binding domain 414 519 IPR036390 -
Viun4g00574 1324 SUPERFAMILY Toll/Interleukin receptor TIR domain 688 834 IPR035897 -
Viun4g00574 1324 Gene3D Ribonuclease Inhibitor 513 681 IPR032675 -
Viun4g00574 1324 Gene3D - 171 338 IPR027417 -
Viun4g00574 1324 Gene3D - 860 1022 IPR027417 -
Viun4g00574 1324 Gene3D - 688 859 IPR035897 -
Viun4g00574 1324 PRINTS Disease resistance protein signature 378 392 - -
Viun4g00574 1324 PRINTS Disease resistance protein signature 208 223 - -
Viun4g00574 1324 PRINTS Disease resistance protein signature 648 664 - -
Viun4g00574 1324 PRINTS Disease resistance protein signature 285 299 - -
Viun4g00574 1324 SUPERFAMILY "Winged helix" DNA-binding domain 1098 1209 IPR036390 -
Viun4g00574 1324 Gene3D - 7 170 IPR035897 -
Viun4g00574 1324 SMART AAA_5 205 348 IPR003593 GO:0016887
Viun4g00574 1324 SMART AAA_5 888 1030 IPR003593 GO:0016887
Viun4g00574 1324 SUPERFAMILY L domain-like 481 668 - -
Viun4g00574 1324 Pfam NB-ARC domain 871 1109 IPR002182 GO:0043531
Viun4g00574 1324 Pfam NB-ARC domain 195 407 IPR002182 GO:0043531
Viun4g00574 1324 SMART till_3 7 145 IPR000157 GO:0007165
Viun4g00574 1324 SMART till_3 694 834 IPR000157 GO:0007165
Viun4g00574 1324 Gene3D - 343 427 IPR042197 -
Viun4g00574 1324 Gene3D - 1026 1110 IPR042197 -
Viun4g00574 1324 FunFam Disease resistance protein (TIR-NBS-LRR class) 691 863 - -
Viun4g00574 1324 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 174 - -
Viun4g00574 1324 SUPERFAMILY L domain-like 1235 1321 - -
Viun4g00574 1324 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 669 IPR044974 GO:0006952
Viun4g00574 1324 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 148 IPR035897 -
Viun4g00574 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 866 1119 IPR027417 -
Viun4g00574 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 437 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00574 Viun-Chr4 3726387 3731762 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00574 185 653 WRKY Transcription Factor Family AT5G45050 28.044 3.13e-42 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00574 - - vun:114181896 2610.1