Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00573 ATGTTTTCCTCTTCCTTAACCTACGATGTGTTCCTCAGCTTCAGAGGGGAAGACGCACTCCACGGTTTCACCGGCAATCTCTACAAAGCTCTCTGTGACAGGGGAATTCACACCTTCATCGATGATGATGACCTTGAGAGTGGAGAGGAAATCTCACCAGCACTTCTGAAAGTAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCAAAACTATGCTTCTTCCTGTTTCTGCTTGGATGAACTTGCAGTCATCCTTAACTGCAAGAATAAAGGGCTACATGTTATACCGGTATTTTATAAGGTGGATCCTTCAGACGTGAGACACCAGAAAGGGAGTTATGGAGAAGCATTGACTAAGCATCAGATAAGATTCAAAGATATGGAGAAGGTGCAGAAATGGAAGATGGCTCTGCGTCAAGTAGCTAACTTGTCTGGCTATCATTTCGAAGACGGAGTTGGATATGAATACAAGTTTATTAAGAGAATTGCTGAGGATGTCAAGCACAAGATTATTCGTGATTCTTTTACACATGTTTCGGATTACCCAATTGGACTAGACTCACAAGTGCTAGAAGTAAGGAAAGTTTTGGAGTTTGGAACTGAGGATGGTGTTCACATGATAGGAATCCACGGGATGGGTGGGATAGGAAAATCAACACTTGCTCGAGCTGTCTACAATGATTTAATTGGTGAGAATTTTGATGGATTGTGTTTTCTTGAAAACGTGAGAGAAAACACAAACAAACATGGGTTAAAACACCTGCAAAGCATCCTTCTATCACAGATATTAGGAGATAAGGACATCTACTTCACAAGTATGCAACAAGGAATTTCTACGATAAAGTGTAGGTTGAAGATGAAGAAGGTTCTCTTGATTCTGGATGATGTTGACAAGCCCGAGCAATTAGAAGCAGTTGCTGGAGGATGTGACTGGTTTGGTCCTGGCAGCAGAATCATCATCACAACTCGGAACAAACAATTGTTGGAAAACCATAGAGTTACTATGACATATGAGGTGAAGGAATTGAATAATAATGATGCTCTTCAGCTGCTTAAATGGAAAGCTTTCAGGAATGTAAAGGTTGATCCAGAGTATGAGTTAGTCTTGAATAGTCTTTTAACTTATGCTTCTGGCCTTCCACTGGCTTTAGAAGTAATAGGAGGCAGCTTGGTCGGAAAAAGTATAGAAGGATGGAAGACCACTGTCAAACAATATGAAATGATTCCCAAAATGGAAATCCTAAGTATACTTAAAGTAAACTTTGATGCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGATATTTCTCGTTTCTTAAATGTATATGCGCCGACAGAGGTTGAAGATATACTTAATGCTTGTTATGGTCGTAGCATGAAACATCACATTGGAATGCTGGTTGAAAAATCTCTGTTGAAGTATGATTATTTTGATAATAGACTTACAATGCATGACTTGGTAAGGGACATGTGTATAAGCATTGCCTGGGAGGAATTACGGAAAGAGCCGGGGAAGAACAGTGGATTATGGTTACATAAAGATGTGATTCATGTTTCGAATAACACTAGAATAAAAGGATTGAATGCAAGCAGCTTCAAGAGGATGAAAACCCTCCAAAAACTTCATAAAAAATTTCAGTTTTTCAATCATTTTCTTCGAAGTTCGAGAGCATTGATATGGTTCAGATTTTCTTCAAATTGTTTACCATCTGCGTTGGATAACTTATTGAAGAAGTTCGAGAATCTAACCGTCATGAGTTTTGACGACTGCAAAATTTTGACGCACATTCCTGATGTATCTGATCTCCCAAATTTGAAGGAACTTTCATTTAAAGAGTGTGAGAATTTAATTACAGTTCACGACTCAGTTGGTTTTCTGACTAAACTTAAAATATTGAGGGTTGTTGGTTGCAGCAAGCTTATTAGTTTTCCACCTCTCAACTTAAACTCTCTCGAAAGACTAGAACTTTCAAATTGTTCCAGTCTTGAGAACTTTCAGAGATTTACCACAGAAGAATGGGAATCTGCTTTAAATCAATATGATTCTGTTGGACTGGAGTCACGTTCAGATGCATTCAGCTACGATGTGTTCCTCAGCTTCAGAGGCTTAGACACACGCTATGGTTTTACGGGCTATCTCTACAAAGCTCTTCATGACAGTGGAATCCACACTTTCATTGCTGATGAAAACCTTCAGAGAGGAGAGGAAATTACACCAACAACTGTGAAAGCAATTAAAGAGTCCAGGATTGCTATCACTGTGCTTTCTGTAAACTATGCTTCTTCCACCTGTTGCTTTGATGAACTTGCAACCATTCTTGACTGCCTTAAGAGAAAAAGACTTCTGGTTTTACCAGTCTTTTATTATGTGGATCCTACACTGGTGCAATTGCAGAAAGACAGTTTTAGAGAAGCCTTGACTAAACATGAGAAGAGGCTCAAGCATGACATGGAAAAGTTGTTGAAATGGAAGATGCTTCTTCATCAAGTAGCTAAGTTGTTTTTCTTTCATATCGACCATGGGAATGGATATGAATATGAGTTTATTGGGAAGATTGTGGAGTGGGTCTCCAAGAAGATTAATCCTGGTCATTACCCAGTTGGAATAGAGTCAAAAGTGCAAGAAGTAATGAAACTTTTGGATGTTGGATGTGATGGTGGTGTCCACATGATAGGGATTCATGGAATTGGCGGGGTTGGAAAATCAACTCTTGCCAAAGAAGTTTATAATGATTTGATTTCGTACAAGTTTGATGCTTCATGTTTTATTGAAAACGTGAGAGAAAAATCAAACAAGCATGGGTTACAATATCTTCAAAGCATCATTCTTCTGAATTTACTTGGAGAGAAGGACATGAAGTTAACAAGTGTGCAACAAGGGATTTCAGTGATACAACGTAGGCTCCAGAAAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAAGGAGGAGCAATTGCAGGCAGTTGTTGGAAGAGCTGATTGGTTTGGTCCTGGCAGCAGAGTCATAATCACAACACGAGATGAACAGCTGTTAGCCTCCCATAATGTTCAAACAACTTATGAGGTGAAGGGATTAAATAACGATGAGGCTCTTCAATTGCTTAAATGGAAAGCTTTTAAAAAGCATTACTTTGATCCGAGTTATGAGGAGCTCCTGAATCATGTAGTAACTTTTGCTGCTGGCATTCCATTAGCATTGGAAGTAATAGGTTCCAACTTGTATGGAAAAAGTGTAGAAGAATGGAAACCAGTCATCCATAAATTAAAAAAATGTCCTAATAATCCGGTTGAAACAATACTTAAAGCAAGCTTTGATTCTTTGGAGGAAAAAGAAAGGAGTGTTTTTCTTGACTTTGCTTGTTGCTTCAAAGGATATGAATTGGCAGAGGTCGAAGATATACTTCAAGCTCAGTATGGTCAGAACATGAAGTGTTACATTGACATATTGGTTGACAAATCTCTAGTAAAGCTTATTCATGGTACAAAACCTTGTTATGATAGAGTTACATTGCATGACTTGATTGAGGACATGGGTAAAGATATTGTCCAACAGGAATCATTGTTAGAGCCAGGTCAGCGTAGCAGGTTATGGTTACTGGAAGATGTTAGAGAAGTTTTAGAAAACAACAGGGGAACTAACAAAATTGAAATCATATGTCTGGATTTCCCCATATTTGATCAAGAAGAAGGAGTAGAATGGAATGGAAAGGCCTTCCAGAATATGCAGAACCTCAGAACACTTATTATTAGAAATGGTAGTTTTTCGAAAGGTCCAGAATATCTACCAGATAATTTGAGAGTGCTTGAATGGTGGAGATATCCGTCAAATAGTTTACCATCTGATTTTCATCCAAAGGAACTTGCCATATGCAAGTTACCCTGCAGTAGTATTTCGACAATTGAGTTGACAAACTTATTGAAGAAGTCGGTGAATCTAAGAGTTTTTAAATTTTCAAATGCAAATGTTTAA 3978 0.3836 MFSSSLTYDVFLSFRGEDALHGFTGNLYKALCDRGIHTFIDDDDLESGEEISPALLKVIEESRIAIVVLSQNYASSCFCLDELAVILNCKNKGLHVIPVFYKVDPSDVRHQKGSYGEALTKHQIRFKDMEKVQKWKMALRQVANLSGYHFEDGVGYEYKFIKRIAEDVKHKIIRDSFTHVSDYPIGLDSQVLEVRKVLEFGTEDGVHMIGIHGMGGIGKSTLARAVYNDLIGENFDGLCFLENVRENTNKHGLKHLQSILLSQILGDKDIYFTSMQQGISTIKCRLKMKKVLLILDDVDKPEQLEAVAGGCDWFGPGSRIIITTRNKQLLENHRVTMTYEVKELNNNDALQLLKWKAFRNVKVDPEYELVLNSLLTYASGLPLALEVIGGSLVGKSIEGWKTTVKQYEMIPKMEILSILKVNFDALEEEEKSVFLDISRFLNVYAPTEVEDILNACYGRSMKHHIGMLVEKSLLKYDYFDNRLTMHDLVRDMCISIAWEELRKEPGKNSGLWLHKDVIHVSNNTRIKGLNASSFKRMKTLQKLHKKFQFFNHFLRSSRALIWFRFSSNCLPSALDNLLKKFENLTVMSFDDCKILTHIPDVSDLPNLKELSFKECENLITVHDSVGFLTKLKILRVVGCSKLISFPPLNLNSLERLELSNCSSLENFQRFTTEEWESALNQYDSVGLESRSDAFSYDVFLSFRGLDTRYGFTGYLYKALHDSGIHTFIADENLQRGEEITPTTVKAIKESRIAITVLSVNYASSTCCFDELATILDCLKRKRLLVLPVFYYVDPTLVQLQKDSFREALTKHEKRLKHDMEKLLKWKMLLHQVAKLFFFHIDHGNGYEYEFIGKIVEWVSKKINPGHYPVGIESKVQEVMKLLDVGCDGGVHMIGIHGIGGVGKSTLAKEVYNDLISYKFDASCFIENVREKSNKHGLQYLQSIILLNLLGEKDMKLTSVQQGISVIQRRLQKKKVLLILDDVDKEEQLQAVVGRADWFGPGSRVIITTRDEQLLASHNVQTTYEVKGLNNDEALQLLKWKAFKKHYFDPSYEELLNHVVTFAAGIPLALEVIGSNLYGKSVEEWKPVIHKLKKCPNNPVETILKASFDSLEEKERSVFLDFACCFKGYELAEVEDILQAQYGQNMKCYIDILVDKSLVKLIHGTKPCYDRVTLHDLIEDMGKDIVQQESLLEPGQRSRLWLLEDVREVLENNRGTNKIEIICLDFPIFDQEEGVEWNGKAFQNMQNLRTLIIRNGSFSKGPEYLPDNLRVLEWWRYPSNSLPSDFHPKELAICKLPCSSISTIELTNLLKKSVNLRVFKFSNANV 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00573 1325 Pfam TIR domain 696 862 IPR000157 GO:0007165
Viun4g00573 1325 Pfam TIR domain 8 171 IPR000157 GO:0007165
Viun4g00573 1325 Gene3D - 171 338 IPR027417 -
Viun4g00573 1325 Gene3D - 861 1023 IPR027417 -
Viun4g00573 1325 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Viun4g00573 1325 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 669 IPR044974 GO:0006952
Viun4g00573 1325 Gene3D - 1027 1111 IPR042197 -
Viun4g00573 1325 Gene3D - 343 427 IPR042197 -
Viun4g00573 1325 PRINTS Disease resistance protein signature 378 392 - -
Viun4g00573 1325 PRINTS Disease resistance protein signature 208 223 - -
Viun4g00573 1325 PRINTS Disease resistance protein signature 648 664 - -
Viun4g00573 1325 PRINTS Disease resistance protein signature 285 299 - -
Viun4g00573 1325 Gene3D Ribonuclease Inhibitor 513 680 IPR032675 -
Viun4g00573 1325 SUPERFAMILY "Winged helix" DNA-binding domain 1099 1210 IPR036390 -
Viun4g00573 1325 ProSiteProfiles TIR domain profile. 694 862 IPR000157 GO:0007165
Viun4g00573 1325 SMART till_3 695 835 IPR000157 GO:0007165
Viun4g00573 1325 SMART till_3 7 145 IPR000157 GO:0007165
Viun4g00573 1325 SUPERFAMILY L domain-like 1235 1322 - -
Viun4g00573 1325 SUPERFAMILY Toll/Interleukin receptor TIR domain 689 835 IPR035897 -
Viun4g00573 1325 Gene3D - 689 860 IPR035897 -
Viun4g00573 1325 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 174 - -
Viun4g00573 1325 Pfam NB-ARC domain 872 1110 IPR002182 GO:0043531
Viun4g00573 1325 Pfam NB-ARC domain 195 407 IPR002182 GO:0043531
Viun4g00573 1325 SUPERFAMILY L domain-like 481 668 - -
Viun4g00573 1325 Gene3D - 7 170 IPR035897 -
Viun4g00573 1325 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 148 IPR035897 -
Viun4g00573 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 867 1120 IPR027417 -
Viun4g00573 1325 SMART AAA_5 205 348 IPR003593 GO:0016887
Viun4g00573 1325 SMART AAA_5 889 1031 IPR003593 GO:0016887
Viun4g00573 1325 FunFam Disease resistance protein (TIR-NBS-LRR class) 692 864 - -
Viun4g00573 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 437 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00573 Viun-Chr4 3726387 3731762 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00573 185 653 WRKY Transcription Factor Family AT5G45050 28.545 3.30e-42 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00573 - - vun:114181896 2616.65