Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00566 ATGGCTGTAACATCACTTTCCCAAGCATTCATGTACGATGTGTTCATCAATTTCAGAGGCTTAGACACACGCCAAGGTTTTACTGGCCATCTCCGCAAAGCTCTTGATGACAGTGGAATCCACGTTTTCGTTGATGATGAGGGCATTCAGAGTGGAAAGAAAATAACACCAGAACTCAAGAAGGCAATTGAAAAGTCCAGGATTGCCATCACTGTGTTCTCAACAAACTATGCTTCTTCTTCCTTCTGTTTAGATGAACTTGCACTCATTCTTGACTGCTCCAAAAGGAATGGACTCTTGGTGTTGCCTGTCTTTTACAAAGTGCCTCCTTGTCATGTCAGACACCAGCAAGGAAATTATGCAGAAGCATTGGCCAGACTAGAGAAAAGGCTTCTGGAGGAGAGGCGCCACCGTAGCATGGAGAATTGGAAAATGGCACTGAATGAAGTAGCTGACCATGCTGGCTTTTCTTTCGAGGATGGAAAAGAATATGAGCACGAGCTTATTGAGAAGATTGTTGAGCGTGTCTTCAGCTTCATTAATAATGGTGAAGAAAAATTACATGTTGCTGATTACCCAGTTGGACTAGGATCACAGGTGCCAGAAATAAGGAAGCTTTTGGATGTTGGATGTGATGATGGTGCCCACATGATAGGGATCCACGGAATGGGCGGTGTAGGGAAATCAACACTTGCCCGCGCAGTTTATAATTTGATCACTGATAAATTTGAAGGTTCGTGTTTTCTTCAAAATGTAAGAGAAGAATCAAACAAACACGGGCTAAAACACATTCACAGCATCATTCTTTCAGAGGTACTTGGAATGAAGAAAATCAACCTAGCAAGTGAGCAACAAGGAATTTCAATAATAAAGAATAGGCTCAAGCGAAAGAAGGTTCTCTTAGTTCTGGATGATGTAGACCAGCACAAGCAATTACAGGGAATTGCAGGAAGTCCTGATTGGTTTGGTCCCGGCAGTATAGTTATCATCACAACTCGCGACAAACAACTTCTAGCATCTCATGAGGTTAAAACAACACATGAGGTGAAGGAATTGAATAAGGAAGATGCTCTTAAGTTGCTTAAATTCAAAGCTTTTAGAATGGAAGACGTTGATCCAACTTACACGGAGGTATTAAATCAGGTAGTAACTTATGCTTCTGGTATTCCACTGACTTTGGAAGTAATAGGCTCCAACTTGTTTGGAAAAAGTGTACAAGAATGGGAATCTGCTATCAAACAATACAAAAGAATTCCTAGTAATCAAATCCTAGAGATGCTTAAAGTAAGCTTTGATTCATTGGGAGAAGAAGAGAAGAGCGTTTTTCTTGACATTGTTTGTTGCTTCAAAGGGTATAAATTGTCAGAGATTGAAGAGAAACTTCGTGCTCTTTATGATAACTGCATGAAATACCATATTGGGGTGTTAGTTGAAAAGTCTCTCATAAAGATTAATCATGATGAAAGAGTTACATTTCATGACTTGATTGAGGACATAGGTAAAAGAATTGACCGTCAGCAATCACCAAGAGAGCCAGGGAAGCGCAGGAGATTATGGTTACAGGAAGATATAATTCAAGTTTTAAGAGACAACTCGGGAACTAGTGAAATCAAAATTATCTGTCTGTATTTTCCTATATCCGACATCCAAGTAGTAGAATGGGATGGAAACGCTTTCACGAATATGAAAAGCCTTAAAATACTTATTGTTAGAAACGGTATTTTTTCCCAACATATAAGTTATCTACCAGAAAGTTTGAAGGTACTAGAATGGCGTGCACAGGTATCCTTCTGA 1794 0.3969 MAVTSLSQAFMYDVFINFRGLDTRQGFTGHLRKALDDSGIHVFVDDEGIQSGKKITPELKKAIEKSRIAITVFSTNYASSSFCLDELALILDCSKRNGLLVLPVFYKVPPCHVRHQQGNYAEALARLEKRLLEERRHRSMENWKMALNEVADHAGFSFEDGKEYEHELIEKIVERVFSFINNGEEKLHVADYPVGLGSQVPEIRKLLDVGCDDGAHMIGIHGMGGVGKSTLARAVYNLITDKFEGSCFLQNVREESNKHGLKHIHSIILSEVLGMKKINLASEQQGISIIKNRLKRKKVLLVLDDVDQHKQLQGIAGSPDWFGPGSIVIITTRDKQLLASHEVKTTHEVKELNKEDALKLLKFKAFRMEDVDPTYTEVLNQVVTYASGIPLTLEVIGSNLFGKSVQEWESAIKQYKRIPSNQILEMLKVSFDSLGEEEKSVFLDIVCCFKGYKLSEIEEKLRALYDNCMKYHIGVLVEKSLIKINHDERVTFHDLIEDIGKRIDRQQSPREPGKRRRLWLQEDIIQVLRDNSGTSEIKIICLYFPISDIQVVEWDGNAFTNMKSLKILIVRNGIFSQHISYLPESLKVLEWRAQVSF 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00566 597 Pfam NB-ARC domain 200 417 IPR002182 GO:0043531
Viun4g00566 597 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 592 IPR044974 GO:0006952
Viun4g00566 597 Gene3D - 187 347 IPR027417 -
Viun4g00566 597 SUPERFAMILY "Winged helix" DNA-binding domain 422 528 IPR036390 -
Viun4g00566 597 Gene3D - 351 435 IPR042197 -
Viun4g00566 597 PRINTS Disease resistance protein signature 217 232 - -
Viun4g00566 597 PRINTS Disease resistance protein signature 293 307 - -
Viun4g00566 597 PRINTS Disease resistance protein signature 386 400 - -
Viun4g00566 597 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 156 IPR035897 -
Viun4g00566 597 ProSiteProfiles TIR domain profile. 10 180 IPR000157 GO:0007165
Viun4g00566 597 SMART AAA_5 214 355 IPR003593 GO:0016887
Viun4g00566 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 445 IPR027417 -
Viun4g00566 597 Pfam TIR domain 12 178 IPR000157 GO:0007165
Viun4g00566 597 Gene3D - 6 186 IPR035897 -
Viun4g00566 597 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 182 - -
Viun4g00566 597 SMART till_3 11 153 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00566 Viun-Chr4 3700353 3702795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00566 12 591 WRKY Transcription Factor Family AT4G12020 27.778 6.36e-55 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00566 - - vra:106770853 888.641