Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00564 ATGGCTGTAACATCACTTTCCCAAGCATTCATGTACGATGTGTTCATCAATTTCAGAGGCTTAGACACACGCCAAGGTTTTACTGGCCATCTCCGCAAAGCTCTTGATGACAGTGGAATCCACGTTTTCGTTGATGATGAGGGCATTCAGAGTGGAAAGAAAATAACACCAGAACTCAAGAAGGCAATTGAAAAGTCCAGGATTGCCATCACTGTGTTCTCAACAAACTATGCTTCTTCTTCCTTCTGTTTAGATGAACTTGCACTCATTCTTGACTGCTCCAAAAGGAATGGACTCTTGGTGTTGCCTGTCTTTTACAAAGTGCCTCCTTGTCATGTCAGACACCAGCAAGGAAATTATGCAGAAGCATTGGCCAGACTAGAGAAAAGGCTTCTGGAGGAGAGGCGCCACCGTAGCATGGAGAATTGGAAAATGGCACTGAATGAAGTAGCTGACCATGCTGGCTTTTCTTTCGAGGATGGCAGAAAAGAATATGAGCACGAGCTTATTGAGAAGATTGTTGAGCGTGTCTTCAGCTTCATTAATAATGGTGAAGAAAAATTACATGTTGCTGATTACCCAGTTGGACTAGGATCACAGGTGCCAGAAATAAGGAAGCTTTTGGATGTTGGATGTGATGATGGTGCCCACATGATAGGGATCCACGGAATGGGCGGTGTAGGGAAATCAACACTTGCCCGCGCAGTTTATAATTTGATCACTGATAAATTTGAAGGTTCGTGTTTTCTTCAAAATGTAAGAGAAGAATCAAACAAACACGGGCTAAAACACATTCACAGCATCATTCTTTCAGAGGTACTTGGAATGAAGAAAATCAACCTAGCAAGTGAGCAACAAGGAATTTCAATAATAAAGAATAGGCTCAAGCGAAAGAAGGTTCTCTTAGTTCTGGATGATGTAGACCAGCACAAGCAATTACAGGGAATTGCAGGAAGTCCTGATTGGTTTGGTCCCGGCAGTATAGTTATCATCACAACTCGCGACAAACAACTTCTAGCATCTCATGAGGTTAAAACAACACATGAGGTGAAGGAATTGAATAAGGAAGATGCTCTTAAGTTGCTTAAATTCAAAGCTTTTAGAATGGAAGACGTTGATCCAACTTACACGGAGGTATTAAATCAGGTAGTAACTTATGCTTCTGGTATTCCACTGACTTTGGAAGTAATAGGCTCCAACTTGTTTGGAAAAAGTGTACAAGAATGGGAATCTGCTATCAAACAATACAAAAGAATTCCTAGTAATCAAATCCTAGAGATGCTTAAAGTAAGCTTTGATTCATTGGGAGAAGAAGAGAAGAGCGTTTTTCTTGACATTGTTTGTTGCTTCAAAGGGTATAAATTGTCAGAGATTGAAGAGAAACTTCGTGCTCTTTATGATAACTGCATGAAATACCATATTGGGGTGTTAGTTGAAAAGTCTCTCATAAAGATTAATCATGATGAAAGAGTTACATTTCATGACTTGATTGAGGACATAGGTAAAAGAATTGACCGTCAGCAATCACCAAGAGAGCCAGGGAAGCGCAGGAGATTATGGTTACAGGAAGATATAATTCAAGTTTTAAGAGACAACTCGGTATCCTTCTGA 1611 0.4029 MAVTSLSQAFMYDVFINFRGLDTRQGFTGHLRKALDDSGIHVFVDDEGIQSGKKITPELKKAIEKSRIAITVFSTNYASSSFCLDELALILDCSKRNGLLVLPVFYKVPPCHVRHQQGNYAEALARLEKRLLEERRHRSMENWKMALNEVADHAGFSFEDGRKEYEHELIEKIVERVFSFINNGEEKLHVADYPVGLGSQVPEIRKLLDVGCDDGAHMIGIHGMGGVGKSTLARAVYNLITDKFEGSCFLQNVREESNKHGLKHIHSIILSEVLGMKKINLASEQQGISIIKNRLKRKKVLLVLDDVDQHKQLQGIAGSPDWFGPGSIVIITTRDKQLLASHEVKTTHEVKELNKEDALKLLKFKAFRMEDVDPTYTEVLNQVVTYASGIPLTLEVIGSNLFGKSVQEWESAIKQYKRIPSNQILEMLKVSFDSLGEEEKSVFLDIVCCFKGYKLSEIEEKLRALYDNCMKYHIGVLVEKSLIKINHDERVTFHDLIEDIGKRIDRQQSPREPGKRRRLWLQEDIIQVLRDNSVSF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00564 536 Gene3D - 352 436 IPR042197 -
Viun4g00564 536 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 183 - -
Viun4g00564 536 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 529 IPR044974 GO:0006952
Viun4g00564 536 Pfam TIR domain 12 179 IPR000157 GO:0007165
Viun4g00564 536 Pfam NB-ARC domain 201 418 IPR002182 GO:0043531
Viun4g00564 536 PRINTS Disease resistance protein signature 294 308 - -
Viun4g00564 536 PRINTS Disease resistance protein signature 387 401 - -
Viun4g00564 536 PRINTS Disease resistance protein signature 218 233 - -
Viun4g00564 536 ProSiteProfiles TIR domain profile. 10 181 IPR000157 GO:0007165
Viun4g00564 536 SMART AAA_5 215 356 IPR003593 GO:0016887
Viun4g00564 536 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
Viun4g00564 536 Gene3D - 6 187 IPR035897 -
Viun4g00564 536 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 156 IPR035897 -
Viun4g00564 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 446 IPR027417 -
Viun4g00564 536 Gene3D - 188 348 IPR027417 -
Viun4g00564 536 SMART till_3 11 153 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00564 Viun-Chr4 3700342 3702801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00564 195 531 WRKY Transcription Factor Family AT5G45050 33.815 2.72e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00564 - - vra:106770853 791.571