Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00562 ATGGCTGCATCATCCACCTATGATGTGTTTCTCAGCTTCAGAGGAGGAGACACACGCTATGGTTTTGCTGGCAATCTCTACAAAGCTCTCCGTGACAGGGGAATTCACACTTTCATGGATGATGAGATGATTCTGAAGGGAGAGGTACCAATAACAGCGCTTCTGAATGCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCAAAACTATGCTTCTTCCTGTTTCTGCTTGGATGAACTTGCAGTCATCCTTAACTGCAAGAATAAAGGGCTACATGTTATACCGGTATTCTATAAGGTGGATCCTTCAGATGTGAGACACCAGAAAGGGAGTTATGGAGAAGCATTGACTAAGCATCAGAGAAGGTTCAAAGATATGGAGAAGGTGCAGAAATGGAAGATGGCTCTGCGTCAAGTAGCTAACTTGTCTGGCTATCATTTCGAAGACGGAGTTGGATATGAATACAAATTTATTAAGAGAATTGCTGAGGATGTCTATCACAAGATTATTCGTGATTCTTTTACACATGTTTCGGATTACCCAATTGGACTAGACTCACAAGTGCTAGAAGTAAGGAAACTTTTGGATTTTGGAACTGAGGATGGTGTTCACATGATAGGAATCCACGGGATGGGTGGGATAGGAAAATCAACACTTGCTCGTGCTGTCTACAATGATTTAATTGGTGAGAATTTTGATGGATTGTGTTTTCTTGAAAACGTGAGAGAAAACACAAACAAACATGGGTTAAAACACCTGCAAAGCATCCTTCTATCACAGATATTAGGAGATAAGGACATCTACTTTACAAGTATGCAACAAGGAATTTCTACGATAAAGTGTAGGCTGAAGATGAAGAAGGTTCTCTTGATTCTGGATGATGTTGACAATCCCGAGCAATTAGAAGCAGTTGCTGGAGGATGTGACTGGTTTGGTCCTGGCAGCAGAATCATCATCACAAGTCGGAACAAACAATTGTTGGAAAACCATAGAGTTACTATGACATATGAGGTGAAGGGATTGAATAATAATGATGCTCTTCAGCTGCTTAAATGGAAAGCTTTCAGGAATGAAAAGGTTGATCCAGAGTATGAGTTAGTCTTGAATAGTCTTTTAACTTATGCTTCTGGCCTTCCACTGGCTTTAGAAGTAATAGGAGGCAGCTTGGTCGGAAAAAGTATAGAAGGATGGAAGACCACCGTCAAACAATATGAAATGATTCCCAAAATGGAAATCCTAAGTATACTTAAAGTAAACTTTGATGCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGATATTTCTCGTTTCTTAAATGTATATGCGCCGACAGAGGTTGAAGATATACTTAATGCTTGTTATGGTCGTAGCATGAAACATCACATTGGCATGCTGGTTGAAAAATCTCTGTTGAAGTATGATTATTTTGATAATAGACTTACAATGCATGACTTGGTAAGGGACATGTGTATAAGGATTGCCTGGGAGGAATTACGGAAAGAGCCGGGGAAGAACAGTGGATTATGGTTACATAAAGATGTGATTCATGTTTCGAATAACACTAGAATATGTGAAAGTGAATTCAACTATCTTGATTTCTCCAAATCTGTCAAAAAAAGAATAAAAGGATGGAATGCAAGCAGCTTCAAGAGGATGAAAACCCTCCAAAAATTTCATAAAAAATTTCAGTTTTTCAATCATTTTCTTCGAAGTTCGAGAACATTGATATGGTTCAGATTTTCTTCAAATTGTTTACCATCTGCGTTGGATAACTTATTGAAGAAGTTCGAGAATATAACCGTCATGAGTTTTGACGACTGCAAAATTTTGACGCACATTCCTGATGTATCTGATCTCCCAAATTTGAAGGAACTTTCATTTAAAGAGTGTGAGAATTTAATTACAGTTCACGACTCAGTTGGTTTTCTGACTAAACTTAAAATATTGAGGGTTGTTGGTTGCAGCAAGCTTATTAGTTTTCCACCTCTAAACTTAAACTCTCTTGAAATACTAGAACTTTCAAATTGTTCCAGTCTTGAGAACTTTCAGAGATTTACCACAGGTTTCAAAGTTTTTTTTTTCTTTGTATTTTGTTTCCGTTTCTATCATTACAAGCTACATGATCTGACACAACCTGAATATGACTAG 2154 0.3788 MAASSTYDVFLSFRGGDTRYGFAGNLYKALRDRGIHTFMDDEMILKGEVPITALLNAIEESRIAIVVLSQNYASSCFCLDELAVILNCKNKGLHVIPVFYKVDPSDVRHQKGSYGEALTKHQRRFKDMEKVQKWKMALRQVANLSGYHFEDGVGYEYKFIKRIAEDVYHKIIRDSFTHVSDYPIGLDSQVLEVRKLLDFGTEDGVHMIGIHGMGGIGKSTLARAVYNDLIGENFDGLCFLENVRENTNKHGLKHLQSILLSQILGDKDIYFTSMQQGISTIKCRLKMKKVLLILDDVDNPEQLEAVAGGCDWFGPGSRIIITSRNKQLLENHRVTMTYEVKGLNNNDALQLLKWKAFRNEKVDPEYELVLNSLLTYASGLPLALEVIGGSLVGKSIEGWKTTVKQYEMIPKMEILSILKVNFDALEEEEKSVFLDISRFLNVYAPTEVEDILNACYGRSMKHHIGMLVEKSLLKYDYFDNRLTMHDLVRDMCIRIAWEELRKEPGKNSGLWLHKDVIHVSNNTRICESEFNYLDFSKSVKKRIKGWNASSFKRMKTLQKFHKKFQFFNHFLRSSRTLIWFRFSSNCLPSALDNLLKKFENITVMSFDDCKILTHIPDVSDLPNLKELSFKECENLITVHDSVGFLTKLKILRVVGCSKLISFPPLNLNSLEILELSNCSSLENFQRFTTGFKVFFFFVFCFRFYHYKLHDLTQPEYD 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00562 717 SUPERFAMILY L domain-like 479 685 - -
Viun4g00562 717 PRINTS Disease resistance protein signature 377 391 - -
Viun4g00562 717 PRINTS Disease resistance protein signature 665 681 - -
Viun4g00562 717 PRINTS Disease resistance protein signature 207 222 - -
Viun4g00562 717 PRINTS Disease resistance protein signature 284 298 - -
Viun4g00562 717 SMART till_3 6 144 IPR000157 GO:0007165
Viun4g00562 717 FunFam Disease resistance protein (TIR-NBS-LRR class) 3 173 - -
Viun4g00562 717 Pfam TIR domain 7 170 IPR000157 GO:0007165
Viun4g00562 717 Gene3D Ribonuclease Inhibitor 516 692 IPR032675 -
Viun4g00562 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 436 IPR027417 -
Viun4g00562 717 Gene3D - 169 337 IPR027417 -
Viun4g00562 717 Gene3D - 342 426 IPR042197 -
Viun4g00562 717 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 686 IPR044974 GO:0006952
Viun4g00562 717 Gene3D - 2 168 IPR035897 -
Viun4g00562 717 Pfam NB-ARC domain 193 406 IPR002182 GO:0043531
Viun4g00562 717 SUPERFAMILY "Winged helix" DNA-binding domain 413 518 IPR036390 -
Viun4g00562 717 ProSiteProfiles TIR domain profile. 5 171 IPR000157 GO:0007165
Viun4g00562 717 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 147 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00562 Viun-Chr4 3694599 3697402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00562 611 702 WRKY Transcription Factor Family AT5G45050 33.333 3.31e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00562 - - vun:114181900 1379