Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00558 ATGAGTGGTAAATCCTCCGTCTCCAAGGAACTCCATGCCAAGCACACAAAGATATTAGAGGGACTTGTTAAGCTACCCGACAACAGGGAATGTGCAGATTGCGGAACAAAGGCACCGCGATGGGCAAGTGTGAACTTAGGAATATTCATTTGCATGCAATGTTCAGGAATTCATCGGAGTCTTGGAGTACATATATCACAGGTGCGATCCACAACTTTGGATACCTGGTTGCCAGATCAAGTTTCTTTTATGCAATTAATGGGTAATGCGAGGTCAAATAAGCACTGGGAGGCAGAGTTACCGCCAAATTTTGACAGAAATGGATATGGAATCGAGAGATTTATTCGTTCGAAGTATGTGGAGAAAAGATGGGCTTCAAAGGGTGAACTACAACCAGCTTCAAAGTCAGCTGAAATAATCTTTAACCGGAATGAGTCACCAGCTACTGGGTCCAAGAGTGGTATTCAGAAGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACATATGAACCATATTCCGCTTCCGACAACAAGATCTCCGACACCAAGATCTCAGGAGCGGTCCCCTGATATGCAAAATAAGCTTTCACCTGTACCATTAAGGAGGCCATCTGCATCATATGATTTTGACAACTCCAGGATGAAGAACAATGGTACTGTTGACCATTTTGGCTTGTTTTCCCCCCCTAATGCTAAACAGGAATTCTCAACTACACCTCCTAGCTGGATAACGTTCGATTGA 750 0.4347 MSGKSSVSKELHAKHTKILEGLVKLPDNRECADCGTKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSTTLDTWLPDQVSFMQLMGNARSNKHWEAELPPNFDRNGYGIERFIRSKYVEKRWASKGELQPASKSAEIIFNRNESPATGSKSGIQKNRRLSLEESILVKHMNHIPLPTTRSPTPRSQERSPDMQNKLSPVPLRRPSASYDFDNSRMKNNGTVDHFGLFSPPNAKQEFSTTPPSWITFD 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00558 249 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Viun4g00558 249 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Viun4g00558 249 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Viun4g00558 249 MobiDBLite consensus disorder prediction 227 249 - -
Viun4g00558 249 MobiDBLite consensus disorder prediction 177 195 - -
Viun4g00558 249 CDD ArfGap 19 119 - -
Viun4g00558 249 MobiDBLite consensus disorder prediction 233 249 - -
Viun4g00558 249 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
Viun4g00558 249 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Viun4g00558 249 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 137 IPR001164 GO:0005096
Viun4g00558 249 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 247 IPR044520 GO:0005096
Viun4g00558 249 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Viun4g00558 249 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Viun4g00558 249 MobiDBLite consensus disorder prediction 173 212 - -
Viun4g00558 249 SMART arf_gap_3 16 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00558 Viun-Chr4 3671600 3675228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00558 22 119 C2H2 Transcription Factor Family AT4G05330 51.923 5.60e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00558 K12486 - gmx:100802691 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00558 4 3671600 3675228 Viun4g00558 4 3671600 3675228 ECH