Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00538 ATGGGTAGAAAGAAAAGAACTGAAGGACCTAGTGGGGGTGAAAGCTCTGAGGCTCAACGCCCTGCTGAAAGAAGTGCACCGCCCCAACAACAGGCTGCTGCCCCTGGTGGGACTGGACCCCAAGGAGGAGGTAGAGCCTGGGGTCCCCAAGGAGGGCGAGGAGGTTATGGTGGAGGCCGTGGCCGTGGGATGCCTCAGCAACAATACGGCATACCCCAACAGCAATATGGCGCCCCTGCTGATTATCAAGGTAGGGGACGAGGTGGGTCTTCTCAGCAAGGAGGCCGTGGGGGATATGGTGGTGTCCGAGGCGGTGGTGGTGGTGGTGGTGTCGGCGGTGGCCGAGGCATAGGTCCTTCATATGGTGGTCCTTCTAGGCCACCAGTACCCGAGCTGCACCAAGCAACCTCAGTTCAATCATATCAAACTGGGGTGAGTCCTCAGCCTACAACATCTGAGGCTAGTTCTTCCTTGCCGCCTGAACCGGTGGATTTGGAGCAATCGGTGGGGCAGATGGTGATTTCTGAAGCTACTCCTACCCCTCCTCCCCAAAGTAAATCATCGATGAGGTTTCCCCTTCGACCTGGGAAGGGTAGCTATGGCATAAAATGCATTGTTAAGGCTAATCATTTCTTTGCCGAGTTACCTAACAAAGATCTTCATCAATATGACGTAACCATTACTCCAGAAGTAACGTCCAGAGGTGTGAACCGTGCTGTTATGGAGCAATTGGTCAGGCTTTATCGGGAATCTCACTTAGGCAAGAGGCTTCCTGCATATGATGGACGCAAAAGCCTCTATACTGCTGGGCCCTTGCCATTTATTTCAAAGGAGTTTAGAATTACTCTTGTCGATGACGATGAAGGAGCAGCAGGAGGACAGAGGAGGGACCGAGAGTTCAAGGTGGTGATTAAGTTGGCTGCACGGGCAGACCTTCACCATTTAGGGCTGTTTTTACAGGGAAGGCAGACTGATGCGCCACAAGAGGCTTTGCAGGTCCTAGACATTGTACTGCGTGAACTCCCTACTACAAGGTATTGTCCTGTAGGAAGATCATTTTATTCACCAGATCTGGGAAGAAGGCAACCATTAGGTGAAGGATTGGAGAGCTGGCGTGGTTTCTACCAGAGTATTCGTCCAACTCAGATGGGGTTGTCACTGAATATTGATATGTCCTCCACTGCTTTTATAGAGCCACTGCCAGTTATCGACTTTGTTACCCAATTGCTGAATAGAGATGTTTCTGCTCGACCCCTGTCTGATGCTGATCGAGTGAAGATCAAGAAAGCTCTCCGAGGGATCAAAGTTGAAGTAACACACAGAGGGAATATGAGAAGAAAATACCGAATTTCTGGCCTGACTTCTCAGGCAACAAGAGAGTTGACATTCCCTGTAGATGAAAGGGGGACTATGAAATCTGTTGTGGAGTACTTCTATGAGACATATGGGTTTGTCATTCAGCATACTCAGTGGCCTTGTCTGCAAGTTGGGAATACACAGAGGCCAAACTATTTGCCAATGGAGGTATGCAAGATTGTGGAAGGTCAGAGATATTCTAAGAGGTTAAATGAGAGACAGATCACTGCTCTTCTGAAGGTTACATGTCAGCGTCCTGTTGAGAGGGAGCGTGATATCATGCAGACTGTATATCATAATGCGTACCATGAAGATCCTTATGCCCAAGAGTTTGGAATCAAAATTAGTGAGAAGCTTGCTCAAGTTGAAGCACGCATCCTACCTGCACCCTGGCTCAAATATCATGATACAGGAAGAGAGAAGGATTGTCTTCCTCAAGTTGGGCAATGGAATATGATGAACAAGAAAATGGTGAATGGGGGTACTGTTAATCATTGGTTCTGCATCAATTTTTCAAGGAGTGTTCAAGATAGCGTTGCCCGTGGCTTCTGCTATGAACTTGCTCAGATGTGCTATATATCTGGCATGGCATTTAACCCGGAGCCAGTCGTCCCACCAGTCAGTGCTCGCCCTGATCAGGTGGAGAAAGTTCTAAAAACCCGTTATCAAGATGCAAAGAATAAGCTTCAGGGAAGGGAGCTTGATTTGCTCATTGTTATTTTACCTGACAATAATGGATCTCTTTATGGTGACCTCAAACGTATATGTGAGACAGATCTTGGACTAGTTTCACAATGTTGTTTGACTAAGCATGTCTTTAAAATGAGCAAACAGTACCTCGCAAATGTGGCACTGAAAATTAATGTCAAAGTGGGAGGGAGAAACACTGTACTTGTTGATGCACTTTCACGCCGCATCCCCTTGGTTGGTGACAGACCTACTATTATTTTTGGAGCTGATGTGACTCATCCACATCCTGGAGAGGATTCAAGCCCATCAATTGCAGCTGTTGTGGCTTCCCAAGATTATCCTGAAATTACAAAGTATGCTGGTTTAGTTTGTGCCCAAGCTCATAGACAGGAACTCATTCAGGATCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACAGTGACTGGTGGAATGATCAAGGAACTTCTTATATCTTTTAGGAGGGCTACGGGACAGAAGCCACAACGCATTATATTTTACAGGGATGGTGTTAGTGAAGGTCAATTTTACCAAGTTCTACTGTTTGAACTTGATGCTATTCGAAAGGCATGTGCATCCCTTGAACCCAACTATCAACCTCCAGTGACATTTGTTGTGGTTCAAAAGCGTCATCACACAAGGCTCTTTGCTAGCAACCATCATGACAAGAGTTCTGTTGACAGGAGTGGCAACATATTGCCCGGCACAGTTGTCGATTCCAAAATCTGCCATCCAACAGAGTTTGATTTTTATCTTTGTAGCCATGCTGGAATACAGGGTACAAGCCGACCTGCTCACTATCACGTGTTGTGGGATGAAAACAATTTCACTGCAGATGCTTTGCAAACTCTTACTAACAACCTTTGCTACACATATGCGAGGTGCACACGATCTGTTTCAATTGTGCCTCCTGCATATTATGCCCACTTGGCTGCTTTCCGAGCAAGATTTTACATGGAACCGGAGACGTCGGATAGTGGGTCCATGACGAGTGGTGCAGTTGCTGGCCGTGGAATGGGTGGCGGTATTGGTCGAAGCACCCGAGCACCTGGAGCTAATGCTGCTGTGAGACCACTACCTGCTCTGAAGGAGAATGTGAAGAGGGTTATGTTTTATTGTTAA 3189 0.4704 MGRKKRTEGPSGGESSEAQRPAERSAPPQQQAAAPGGTGPQGGGRAWGPQGGRGGYGGGRGRGMPQQQYGIPQQQYGAPADYQGRGRGGSSQQGGRGGYGGVRGGGGGGGVGGGRGIGPSYGGPSRPPVPELHQATSVQSYQTGVSPQPTTSEASSSLPPEPVDLEQSVGQMVISEATPTPPPQSKSSMRFPLRPGKGSYGIKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFRITLVDDDEGAAGGQRRDREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVYHNAYHEDPYAQEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFSRSVQDSVARGFCYELAQMCYISGMAFNPEPVVPPVSARPDQVEKVLKTRYQDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVGDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGMGGGIGRSTRAPGANAAVRPLPALKENVKRVMFYC 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00538 1062 CDD Piwi_ago-like 558 1008 IPR045246 -
Viun4g00538 1062 MobiDBLite consensus disorder prediction 22 36 - -
Viun4g00538 1062 SUPERFAMILY Ribonuclease H-like 674 1009 IPR012337 -
Viun4g00538 1062 SMART Piwi_a_2 688 1009 IPR003165 GO:0003676
Viun4g00538 1062 SMART DUF1785_2 347 399 IPR014811 -
Viun4g00538 1062 MobiDBLite consensus disorder prediction 132 162 - -
Viun4g00538 1062 Pfam Glycine-rich region of argonaut 77 175 IPR024357 -
Viun4g00538 1062 Pfam Argonaute linker 1 domain 348 398 IPR014811 -
Viun4g00538 1062 Gene3D paz domain 393 518 - -
Viun4g00538 1062 Gene3D - 578 751 - -
Viun4g00538 1062 Pfam PAZ domain 404 529 IPR003100 GO:0005515
Viun4g00538 1062 Pfam Mid domain of argonaute 597 672 IPR032473 -
Viun4g00538 1062 CDD PAZ_argonaute_like 399 513 - -
Viun4g00538 1062 Gene3D - 757 1062 IPR036397 GO:0003676
Viun4g00538 1062 Pfam N-terminal domain of argonaute 204 338 IPR032474 -
Viun4g00538 1062 Pfam Argonaute linker 2 domain 540 586 IPR032472 -
Viun4g00538 1062 FunFam Argonaute 10 578 751 - -
Viun4g00538 1062 ProSiteProfiles PAZ domain profile. 400 514 IPR003100 GO:0005515
Viun4g00538 1062 ProSiteProfiles Piwi domain profile. 688 1009 IPR003165 GO:0003676
Viun4g00538 1062 FunFam protein argonaute 10-like 757 1062 - -
Viun4g00538 1062 Pfam Piwi domain 689 1008 IPR003165 GO:0003676
Viun4g00538 1062 SUPERFAMILY PAZ domain 205 554 IPR036085 GO:0005515
Viun4g00538 1062 SMART PAZ_2_a_3 404 536 IPR003100 GO:0005515
Viun4g00538 1062 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 183 1010 - -
Viun4g00538 1062 MobiDBLite consensus disorder prediction 1 163 - -
Viun4g00538 1062 FunFam Protein argonaute-2 393 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00538 Viun-Chr4 3512603 3519342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00538 81 1062 Eukaryotic Initiation Factors Gene Family AT1G48410 81.699 0.0 1624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00538 K11593 - gmx:100778754 1853.18