Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00537 ATGTCACCGGTTGGATTACCACCTGGCTTTAGGTTCCATCCAACCGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTCTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTACCGAGTAGAGATCCAGAGTGGTACTTTTTTGGACCCCGGGATAGGAAATACCCGAATGGGTTTAGAACAAATAGAGCAACTCGTGCAGGGTACTGGAAGTCCACTGGAAAAGATAGGAGAGTTTCTTGCCAAAGCAGACCCATTGGCATGAAGAAGACTTTGGTGTACTATAGAGGCAGAGCTCCACAAGGAATCAGAACTGATTGGGTAATGCATGAGTATCGCCTTGATGACAAAGAGTGTGAAGACACCACTGGTTTACAGGATACTTATGCATTGTGCCGGGTGTTCAAGAAAAATGGAATCTGTTCTGAGATTGAAGAGCAAGGACAATGTAGTATAGCACTAACTGAGAGCTGCCAAACCATAATTAATGAGTGTGAAACCATGTCTCCTGACATACCAGGTGCATCATCATCATGCTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATCACAGAAGATGCATGGTATTCTTCTAATGCAGCTATGGTTGGTGGTGAAGAACTCTCACATGTTACATTTACAAACTAA 714 0.423 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSEIEEQGQCSIALTESCQTIINECETMSPDIPGASSSCLEEEDKDDSWMQFITEDAWYSSNAAMVGGEELSHVTFTN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00537 237 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Viun4g00537 237 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Viun4g00537 237 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Viun4g00537 237 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 178 - -
Viun4g00537 237 FunFam Nac domain-containing protein 86 15 159 - -
Viun4g00537 237 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00537 Viun-Chr4 3479486 3483250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00537 1 226 NAC Transcription Factor Family AT3G17730 77.686 6.83e-134 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun4g00537 NAM 9.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00537 - - gmx:100784495 493.426