Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00534 ATGGCTAACATGGTTTTTGTTGGTGTTAAGGTAGCTGCTGTTTCTCTACCACCATTACCCATTACAAACAATGCTCTAACTTTCGATTCCACCCAGAAGAGACACTTCCTTCCTCTGAATTGCTCCCAAACCAATAACAGAACAACCTCTTTCTCTTCTTCCTTCTCAATCTCATCATCACCCCTTACAAACAAGGGTGGTTGTTCTGTGTTGCCGTGTCTCCCTCCTGCTTCGTCTGAATCCTCAACCTCATCATTTTCCACTGCTAAACCCTCTACCCCTTTTCCTTCAACTAAGCTTTACGTCAGTGGGTTATCATTTCGTACCACTGAAGAAAGTTTGCGAAATGCTTTTAAGAATTTTGGTCAACTCGTGGAAGTCAAGCTGGTGATGGATAGAATCGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGCTACGCAACTGAAGAAGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTTTTGGATGGCAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAGCTACCGCAGCGGAAAAGGGAAGGCACAAGATTTTAA 573 0.4363 MANMVFVGVKVAAVSLPPLPITNNALTFDSTQKRHFLPLNCSQTNNRTTSFSSSFSISSSPLTNKGGCSVLPCLPPASSESSTSSFSTAKPSTPFPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPQRKREGTRF 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00534 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Viun4g00534 190 SUPERFAMILY RNA-binding domain, RBD 91 186 IPR035979 GO:0003676
Viun4g00534 190 PANTHER NUCLEOLAR PROTEIN 8 79 186 - -
Viun4g00534 190 Gene3D - 77 190 IPR012677 -
Viun4g00534 190 SMART rrm1_1 99 172 IPR000504 GO:0003723
Viun4g00534 190 FunFam Organelle RRM domain-containing protein 6, chloroplastic 82 189 - -
Viun4g00534 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00534 Viun-Chr4 3471162 3473559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00534 89 183 Eukaryotic Initiation Factors Gene Family AT3G16380 35.789 1.86e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00534 - - gmx:100305561 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00534 4 3471162 3473559 Viun4g00534 4 3471162 3473559 ECH