Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00533 ATGATATGCTGCTGCTTAATTGGAAGCTGGTCTCAATCGTCTTGCATTCAATCTTGTGGAGACTTTTGTCCTCTTTTATTTGATCAAATAGAAAGCACGAGATCAACCATATCAGGCTTAGCTAGTAACTGCCATTCAAATGCTGCAAAACAATCTGAAAATGTTGCTCATATACCTTCTGTTGGAAACGGCCATACTCCCAAGGTGAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTACGGTCGAGGGTGGCGCCAAATTGAAGAGCATATAGGTACCAAAACAGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTTTCTAAGGTTGTTAGGGAATCTGAGGGAAGTGCTGAGAGTTCTATACAGCCAATTAACATACCTCCTCCTCGGCCTAAGAGAAAACCCCTCCATCCATATCCCCGAAAATCACTTGATGCTTTCAAAGGACATACCATACCTAATGAAACTGAAACATCTCAATCCACAAACCTGTTGGTTGCAGAGAAAGACACCCCATCTCCTACCTCTGTGCTATCTACGGTTGGTTCGGAAGCATTTGGGTCTGCATTTTCAGAGCAGAATAACAGATGCCTTTCACCAAACTCTTGCACCACTGATATTCACTCCGTCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGTATGACATCCAAAGCATCTGAGGAGGAAGAGAAAGGATCTCCAGCTTCAGTTCCTTTATCCATTGTTTCCTACCCAAACATGTGCATGAAGCCCGAGTTTAGTACCAAGGAAACTGAATATGTTATAGAAGATTCTACCAATATGCCACAGACCACTAGTATTAAGCTTTTTGGAAGAACAGTGTCTATGGTAGATAATCATAAGTTACAGAACATAGATGATAATGGTAAGGCAATAACTGTGAAGTCTGATGAAGTGGATGATGTTGGGAATGAGAAGCCTGGCCAATCAACCGAGCAAGTAGATACACAATTATCACTAGGCTTGGTTGGTGGCAACTGGGCCATAACACCTGATTCTGATGGAGCTGATTACAGCCAAGAGCCACCGAAGGAGAACGTGTGCCTCAGTGAATGTGTACCTGATGCATCTTTTCCACAGTGGAGTTTGTACCAAGGCCTCCCAGCTTTCTGTGTCAGCCCATGCAACCAGATCCTAAATCCCATGCCTCTTAGGCCCTCTTTGAAAGTAAGAGCAAGAGAGGAGGAAAGTTGTTGCACTGGTTCCAACACAGAATCAGTTTGTGACATGGAAAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGTGTGAAAAATATCAAGGGGAAGGAGCTGCACCCCAGAAGCCTGCAAGAGGGTTTGTTCCATATAAAAGATGTTTAGCCGAAAGAGATGGAAATTCTTTAATTGCGGCCTTGGAAGAGAGGGACGGGCAACGAGCTCGTGTGTGCTCATAG 1497 0.4342 MICCCLIGSWSQSSCIQSCGDFCPLLFDQIESTRSTISGLASNCHSNAAKQSENVAHIPSVGNGHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEGSAESSIQPINIPPPRPKRKPLHPYPRKSLDAFKGHTIPNETETSQSTNLLVAEKDTPSPTSVLSTVGSEAFGSAFSEQNNRCLSPNSCTTDIHSVSLSPVEKENDCMTSKASEEEEKGSPASVPLSIVSYPNMCMKPEFSTKETEYVIEDSTNMPQTTSIKLFGRTVSMVDNHKLQNIDDNGKAITVKSDEVDDVGNEKPGQSTEQVDTQLSLGLVGGNWAITPDSDGADYSQEPPKENVCLSECVPDASFPQWSLYQGLPAFCVSPCNQILNPMPLRPSLKVRAREEESCCTGSNTESVCDMENQGKNSDAVDSKCEKYQGEGAAPQKPARGFVPYKRCLAERDGNSLIAALEERDGQRARVCS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00533 498 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Viun4g00533 498 CDD SANT 81 124 IPR001005 -
Viun4g00533 498 FunFam protein REVEILLE 6 isoform X1 81 129 - -
Viun4g00533 498 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Viun4g00533 498 NCBIfam myb-like DNA-binding domain, SHAQKYF class 77 126 IPR006447 GO:0003677
Viun4g00533 498 MobiDBLite consensus disorder prediction 232 257 - -
Viun4g00533 498 SMART sant 78 126 IPR001005 -
Viun4g00533 498 Gene3D - 81 128 - -
Viun4g00533 498 PANTHER SWI/SNF COMPLEX-RELATED 43 311 - -
Viun4g00533 498 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Viun4g00533 498 ProSiteProfiles SANT domain profile. 77 128 IPR017884 -
Viun4g00533 498 MobiDBLite consensus disorder prediction 134 159 - -
Viun4g00533 498 SUPERFAMILY Homeodomain-like 73 127 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00533 Viun-Chr4 3467172 3471086 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun4g00533 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00533 - - vum:124836796 885.945