Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00532 ATGGAGATGCAGGATCAAATAGAAAGCACGAGATCAACCATATCAGGCTTAGCTAGTAACTGCCATTCAAATGCTGCAAAACAATCTGAAAATGTTGCTCATATACCTTCTGTTGGAAACGGCCATACTCCCAAGGTGAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTACGGTCGAGGGTGGCGCCAAATTGAAGAGCATATAGGTACCAAAACAGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTTTCTAAGGTTGTTAGGGAATCTGAGGGAAGTGCTGAGAGTTCTATACAGCCAATTAACATACCTCCTCCTCGGCCTAAGAGAAAACCCCTCCATCCATATCCCCGAAAATCACTTGATGCTTTCAAAGGACATACCATACCTAATGAAACTGAAACATCTCAATCCACAAACCTGTTGGTTGCAGAGAAAGACACCCCATCTCCTACCTCTGTGCTATCTACGGTTGGTTCGGAAGCATTTGGGTCTGCATTTTCAGAGCAGAATAACAGATGCCTTTCACCAAACTCTTGCACCACTGATATTCACTCCGTCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGTATGACATCCAAAGCATCTGAGGAGGAAGAGAAAGGATCTCCAGCTTCAGTTCCTTTATCCATTGTTTCCTACCCAAACATGTGCATGAAGCCCGAGTTTAGTACCAAGGAAACTGAATATGTTATAGAAGATTCTACCAATATGCCACAGACCACTAGTATTAAGCTTTTTGGAAGAACAGTGTCTATGGTAGATAATCATAAGTTACAGAACATAGATGATAATGGTAAGGCAATAACTGTGAAGTCTGATGAAGTGGATGATGTTGGGAATGAGAAGCCTGGCCAATCAACCGAGCAAGTAGATACACAATTATCACTAGGCTTGGTTGGTGGCAACTGGGCCATAACACCTGATTCTGATGGAGCTGATTACAGCCAAGAGCCACCGAAGGAGAACGTGTGCCTCAGTGAATGTGTACCTGATGCATCTTTTCCACAGTGGAGTTTGTACCAAGGCCTCCCAGCTTTCTGTGTCAGCCCATGCAACCAGATCCTAAATCCCATGCCTCTTAGGCCCTCTTTGAAAGTAAGAGCAAGAGAGGAGGAAAGTTGTTGCACTGGTTCCAACACAGAATCAGTTTGTGACATGGAAAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGTGTGAAAAATATCAAGGGGAAGGAGCTGCACCCCAGAAGCCTGCAAGAGGGTTTGTTCCATATAAAAGATGTTTAGCCGAAAGAGATGGAAATTCTTTAATTGCGGCCTTGGAAGAGAGGGACGGGCAACGAGCTCGTGTGTGCTCATAG 1428 0.4377 MEMQDQIESTRSTISGLASNCHSNAAKQSENVAHIPSVGNGHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEGSAESSIQPINIPPPRPKRKPLHPYPRKSLDAFKGHTIPNETETSQSTNLLVAEKDTPSPTSVLSTVGSEAFGSAFSEQNNRCLSPNSCTTDIHSVSLSPVEKENDCMTSKASEEEEKGSPASVPLSIVSYPNMCMKPEFSTKETEYVIEDSTNMPQTTSIKLFGRTVSMVDNHKLQNIDDNGKAITVKSDEVDDVGNEKPGQSTEQVDTQLSLGLVGGNWAITPDSDGADYSQEPPKENVCLSECVPDASFPQWSLYQGLPAFCVSPCNQILNPMPLRPSLKVRAREEESCCTGSNTESVCDMENQGKNSDAVDSKCEKYQGEGAAPQKPARGFVPYKRCLAERDGNSLIAALEERDGQRARVCS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00532 475 FunFam protein REVEILLE 6 isoform X1 58 106 - -
Viun4g00532 475 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Viun4g00532 475 MobiDBLite consensus disorder prediction 111 135 - -
Viun4g00532 475 Gene3D - 58 105 - -
Viun4g00532 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Viun4g00532 475 MobiDBLite consensus disorder prediction 210 234 - -
Viun4g00532 475 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Viun4g00532 475 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Viun4g00532 475 PANTHER SWI/SNF COMPLEX-RELATED 20 288 - -
Viun4g00532 475 ProSiteProfiles SANT domain profile. 54 105 IPR017884 -
Viun4g00532 475 CDD SANT 58 101 IPR001005 -
Viun4g00532 475 SMART sant 55 103 IPR001005 -
Viun4g00532 475 NCBIfam myb-like DNA-binding domain, SHAQKYF class 54 103 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00532 Viun-Chr4 3466595 3471086 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun4g00532 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00532 - - vum:124836796 885.56