Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00525 ATGGCTCGTTTTGAAAAAGATGAGGTTCCTATGCTGTCTGAAACACGTGGTCAACTATCTGATGAATTCGTGGATTCTAATTTCCGGAGGCTAGTATCTAGAACACGAAGTGCTTCAATGTCCATTCCTATGGCATCATTGGAATCATATGAGAAAGAAACTAGTCTTGTGGGACATACCGGTCCCCTTCGTAGTTTGAGGAAGACCCCCTTTGTGCAGATGAGTGGTCCACTGTATGCTACCAATGGAACTTCAAATTTTTCAGGACAGAATATAGCTGCGACAGGAAACAAAGTAGTGGAGAGTAAGACAGAAAATTTCTCTACTTTCAATGGCACAAATGAAAATCGTTGGGATAATGACTATGACAGAAAGAATGAACACTTAATGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGTACTACTTGCCCCACTTATTTCAAGGCTGCTCAGCCAAGAACTCGAAAAACATCAGCTATATTTGATCCCAAGTTCCCCCATGTTTTTTATGGGGATGCCAAGGGTTTTGGTAGAAAATTTCTTTCCTTCTGCTATTCTTATGTTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTACAACAATGGAACAAGATCTTGGCCATTTTTTGCTTGGTGGCAATTTTTGTTGATCCATTATTTTTCTTCTTAATATATGTGAAGGAGGATGATAAATGTATTGCAATCAATTGGACAATGACAACAACGCTTGTTTTTTTTAGAAGCATTAATGATTTGATATATTTCTTTAACATTCTTCTCCAGTTTAGGCTTGCTTATGTTTCTCCTGAGTCAATGGTAGTAGGTGCTGGAGATTTAGTGGACCAACCCAAGAAAATTGCTCTTAATTATCTGAGGAGTTATCTTTTTATCGACCTATTTGTTGTATTTCCTCTTCCTCAGGTAATGATATTATCTGTCCTACCAAATTACCTGGGATCATCTGGAGCAAATTATGCTAAAAATCTTCTGCGTGCAGCAATCCTTGTGCAGTATTTTCCCAGATTATTCAGGTTTCTGCCTCTGCTAATTGGCCAGTCTCCAACAGGATTCATTTTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGTTCTTTCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGCTTGCGAAATGCCTGCCGTGATTCTAATATTCGTGGATGCTCAACATTTATTGATTGTGGTCGTTTATCTGGCCGTAAGTCAGATATATGGAGCGAAAATGTGAATGCCACTGCATGTTTGAATGGCACTTCCGGTGCTTTTCAATATGGAGTCTATGTAAATGCTGTAGCACTTACTACAGAAACTAAGGTGATCAACAAATATGTATTTGCACTGTTTTGGGGCTTCCAGCAAATTAGTACTCTGGCTGGTAATCAAACCCCAAGCTATTTTATATGGGAAGTCCTTTTTACGATGGCCATCATAGGTTTGGGACTCTTACTTTTTGCACTTCTCATTGGTAACATACAGAACTTTCTTCAGGCTCTTGGACGCAGGAGGCTAGAAATGCAACTTAGAGGTCGTGATGTTGAACAATGGATGAGCCACCGTCGCTTGCCAGAAGATCTAAGAAGGAGAGTACGACAAGCAGAACGATATAACTGGGCAGCAACAAGGGGTGTAAATGAAGAGATGCTTCTGGAGAATTTGCCAGAAGATCTCCAGACAGACATAAGACGTCATCTCTTCGAGTTTGTTAAGAAAGTTCGCATTTTTGCGCTGATGGATGAGCCTATCCTAGATGCAATATGCGAGAGACTAAAGCAAAAGACATACATCAAAGGAAGTAAAATTTTGACTCAGGGTGGTCTTGTAGAGAAAATGGTCTTTGTTGTTCGAGGGAAATTGGAGAGCTTTGGAGATGATGGAACTAGTGCTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAGCATTCTTCTGTAACCACAGATGGGAAAAAAGTAAGAGTTCAAGGACAGAGGTTGCTGAGTAACAGGACGGTAAAATGCTTAACAAATGTGGAGGCATTTTCACTTCGTGCCGGAGACCTTGAGGAACTCACAATTCTTTTCACAAGATTCTTGCGGAACCCTCATGTTCTAGGAGCTCTGAGGTATGTATCACCATATTGGAGATCCCTTGCAGCAAGTCGTATTCAGGTTGCATGGAGATACAGAAAGAAGCGTCTAAGTCGTGCCTATACCTCTCAATCAGATCAAACAAATCAACAACGAAACATGGCTAATTTTGAACAAACTGGGGAGCCTAGTTCATGCGAAACACATGCACAACATAATGGACATTCTAGGTTTGTAAAGGTTGTATCAAGGACAAGAAGTGCATCAATTTCTGTTCCTGTGATCTCCATGGAGCCATATGAGAGAGAAATTAGTCTTGTGGGTCATACTACTACCAATGGAACTGAAAATCCTTTGAATCACACTATAGTTGTGGAAGGAAACAAAGTAGTGGAGAGCAAGACAGAAAAATTTTGTAATCTCAGTGAGAAAGATGAAAATCATTGCAATAACAACTATGATAGAAAGAATGAACACTTTGTGAGGTCTAGGCTACTGGGAACATGTAATGATCCTTATTGTACTACTTGTCCAACTTACTTCAAGGCCTCTATGCAAAGACTTCCAAATGCTTCTTCTGTGTTTGATCCTCAGTTTCACTTCCGCAGTGCTCTTTATGGGGATGCCAAGGGTTTTGGGAGAAAGATTCTCTCTTTCTGCTCTTCATGTGTTCCTGGAGTTATGAATCCTCACTCAAAAGTTGTACAACAATGGAACAAGCTTTTGGCCATTTTTTGCATGGGAGCAATTTTTGTGGATCCGTTATTTTTGTTTTTAATCTATGCACAGAAGGATGATAAATGTATAGCTATCGACTGGGGCACCAGAAAAATACTTGTTTTTCTTAGAACATTGAATGATACTGTGTATTTCTTGAACATTCTTCTCCAGTTTAGGCTGGCCTATGTTTCTCCAGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGATCATCCCAAGAAAATTGCACTTCATTACCTGAAGGGTTATTTTCTTTTTGACTTGTTTGTTGTATTTCCTCTTCCTCAGATAATGATATTTTTTGTCCTACCAACCCGCTTGGGGGCATCAGGAGCAAACTATGCAAAGAATCTTCTTCGTGCAGCGATCCTTGTGCAGTATGTTCCCAGATTATTCAGGATCCTGCCTCTGCTAATTGGACAATCTGCAACAGGATTTATATTCGAGTCAGCTTGGGCAAATTTCATCATTAATCTTCTCATTTTCATGCTTGCTAGCCATATTGTTGGTTCTTGCTGGTATCTCTTTGGTCTGCAGAGGGTTAATCAATGCTTGCGAGATGCCTGCGGAAAGTCTCATATTGATAGATGCATGACAGTGATTGATTGTGGAAGACGAGGTTATATCAGAAACAACTATTCTGACCAAGCATCAGCTCTATGGAACAACAACACAGATGCCATTGCTTGTTTGAATTCCTCACCCGGTGGTTTCCCATATGGAATCTATCTCAATGTTGTACCTCTCACCACGGAAATTAGTTTGACTAACAAATATATTTATTCCCTTTTTTGGGGGTTCCAGCAAATTAGTACTCTCGCTGGTAGTTTAACCCCAAGCAGGTTTTGGGGAGAGGTCCTTTTTACAATGGCCATTATAGGATTGGGACTCTTGCTTTTTGCAGTTCTTATTGGAAACATACATAACTTTCTTCAAGGTCTTGGAAGAAGAAGGCTAGAAATGCAACTCAGAGGCCGCGATGTTGAGCAATGGATGAAACATCGTCGTTTACCAGAAGATCTAAGAAAGAAAGTACGAAGGGCGGAACGATATAATTGGGCTGCAACAAAAGGAGTGAATGAGGAAATGATTCTGGAGAATTTGCCAGAAGATCTCCAGAGAGACATAAGACGTCATCTCTTCAAATTTGTTAAGAAAGTCCGAATTTTCACTCTGATGGATGAACCTATCTTGGATGCCGTCTGTGAGAGACTGAGACAGAAGACATACATAAAAGGAAGTATAATTTTGAACCAAGGTTGTCTAGTTGAGAAGATGGTCTTTATTGTGCGCGGAAAATTGGAAAGCATCGGAGAAGATGGAGTTGGAGTTCCCTTGTCTGAAGGAGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAACATTCTTCTTCTGTAAGCACAGATGGTAAGAAAGTAAGGCTTCCAGGGCAGAGGTGGCTTAGCAACAGGACAGTAAAGTGCCTAACAAATGTTGAGGCATTTTCAATTCGAGCAGAGGATCTTGAAGAAGTCACAAGCCGGTTCATGAGATTCTTGCGGAATCTTCGGGTTCAAGGATCTCTAAGGTATGAATCACCTTACTGGCGATCCTTGGCAGCAACTCGAATTCAGGTGGCATGGAGATACAGGAAGAAACGTAGAAGTCATTCTATGACCTCACGATTAGATCAATCAATGAGCTTATAG 4587 0.4061 MARFEKDEVPMLSETRGQLSDEFVDSNFRRLVSRTRSASMSIPMASLESYEKETSLVGHTGPLRSLRKTPFVQMSGPLYATNGTSNFSGQNIAATGNKVVESKTENFSTFNGTNENRWDNDYDRKNEHLMRSGQLGMCNDPYCTTCPTYFKAAQPRTRKTSAIFDPKFPHVFYGDAKGFGRKFLSFCYSYVPGVMNPHAKVVQQWNKILAIFCLVAIFVDPLFFFLIYVKEDDKCIAINWTMTTTLVFFRSINDLIYFFNILLQFRLAYVSPESMVVGAGDLVDQPKKIALNYLRSYLFIDLFVVFPLPQVMILSVLPNYLGSSGANYAKNLLRAAILVQYFPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSFWYLFGLQRVNQCLRNACRDSNIRGCSTFIDCGRLSGRKSDIWSENVNATACLNGTSGAFQYGVYVNAVALTTETKVINKYVFALFWGFQQISTLAGNQTPSYFIWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYNWAATRGVNEEMLLENLPEDLQTDIRRHLFEFVKKVRIFALMDEPILDAICERLKQKTYIKGSKILTQGGLVEKMVFVVRGKLESFGDDGTSAPLSEGDACGEELLTWYLEHSSVTTDGKKVRVQGQRLLSNRTVKCLTNVEAFSLRAGDLEELTILFTRFLRNPHVLGALRYVSPYWRSLAASRIQVAWRYRKKRLSRAYTSQSDQTNQQRNMANFEQTGEPSSCETHAQHNGHSRFVKVVSRTRSASISVPVISMEPYEREISLVGHTTTNGTENPLNHTIVVEGNKVVESKTEKFCNLSEKDENHCNNNYDRKNEHFVRSRLLGTCNDPYCTTCPTYFKASMQRLPNASSVFDPQFHFRSALYGDAKGFGRKILSFCSSCVPGVMNPHSKVVQQWNKLLAIFCMGAIFVDPLFLFLIYAQKDDKCIAIDWGTRKILVFLRTLNDTVYFLNILLQFRLAYVSPESRVVGAGDLVDHPKKIALHYLKGYFLFDLFVVFPLPQIMIFFVLPTRLGASGANYAKNLLRAAILVQYVPRLFRILPLLIGQSATGFIFESAWANFIINLLIFMLASHIVGSCWYLFGLQRVNQCLRDACGKSHIDRCMTVIDCGRRGYIRNNYSDQASALWNNNTDAIACLNSSPGGFPYGIYLNVVPLTTEISLTNKYIYSLFWGFQQISTLAGSLTPSRFWGEVLFTMAIIGLGLLLFAVLIGNIHNFLQGLGRRRLEMQLRGRDVEQWMKHRRLPEDLRKKVRRAERYNWAATKGVNEEMILENLPEDLQRDIRRHLFKFVKKVRIFTLMDEPILDAVCERLRQKTYIKGSIILNQGCLVEKMVFIVRGKLESIGEDGVGVPLSEGDACGEELLTWYLEHSSSVSTDGKKVRLPGQRWLSNRTVKCLTNVEAFSIRAEDLEEVTSRFMRFLRNLRVQGSLRYESPYWRSLAATRIQVAWRYRKKRRSHSMTSRLDQSMSL 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00525 1528 Gene3D - 204 521 - -
Viun4g00525 1528 Gene3D Jelly Rolls 1352 1477 IPR014710 -
Viun4g00525 1528 Gene3D Jelly Rolls 594 718 IPR014710 -
Viun4g00525 1528 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 138 781 - -
Viun4g00525 1528 SUPERFAMILY Voltage-gated potassium channels 948 1282 - -
Viun4g00525 1528 ProSiteProfiles cAMP/cGMP binding motif profile. 1354 1432 IPR000595 -
Viun4g00525 1528 Pfam Ion transport protein 207 524 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun4g00525 1528 Pfam Ion transport protein 958 1279 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun4g00525 1528 Gene3D - 956 1278 - -
Viun4g00525 1528 CDD CAP_ED 1354 1482 IPR000595 -
Viun4g00525 1528 SUPERFAMILY cAMP-binding domain-like 1282 1482 IPR018490 -
Viun4g00525 1528 Gene3D Helix hairpin bin 523 588 - -
Viun4g00525 1528 Gene3D Helix hairpin bin 1282 1346 - -
Viun4g00525 1528 ProSiteProfiles cAMP/cGMP binding motif profile. 596 664 IPR000595 -
Viun4g00525 1528 SMART cnmp_10 596 731 IPR000595 -
Viun4g00525 1528 SMART cnmp_10 1354 1487 IPR000595 -
Viun4g00525 1528 SUPERFAMILY Voltage-gated potassium channels 200 524 - -
Viun4g00525 1528 CDD CAP_ED 596 712 IPR000595 -
Viun4g00525 1528 SUPERFAMILY cAMP-binding domain-like 524 717 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00525 Viun-Chr4 3377592 3395424 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00525 5 673 Ion Channels AT3G17700 60.651 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00525 K05391 - gsj:114390051 2108.18