Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00524 ATGGAGAGGGTTAATCAATGTTTTCGAAATGCGTGCCAAAGTTCTAATATCCCTGGATGTCTGGCATTCATTGATTGTGGACATAGCCATGTTGGGGACAATCAGCTTGGCTTATCATCAAACCAGTGGAACAACAATGCAGATGCTATTGCATGTTGGAATTCCTCTTCCACAGGTTCTTTTGCTTATGGGATTTATAACAATGCTGTTCCTCTTACTACACAAACAGACATCGTCACCAAATACATATATGCTCTATTTTGGGGGTTACAGCAAATCAGTACTCTGGCCGGTAACCAAACACCAAGCGACTTTGTGTATGAAACCCTTTTTACTATAGCCATCATAGGAATGGGACTTTTGCTTTTTGCGCTTCTCATTGGAAACATTCAGAACTTTCTTCAAGGTCTTGGACGGAGGAGGCTAGAAATGCAACTTAGATGCGGTGATGTTGAGCAATGGATGAGTCATAGGCGCTTACCAGAATACCTCAGAAGGAGAGTACGAGAGGCTGAACGATATAGTTGGACTGCAACAAGAGGGGTGAATGAAGCAACACTAATGGAGAACTTTCTAGAAGACCTCCAAATGGATATAAGACGCCATCTCTTCAAATTTGTTAAGAAAGTTCGAATATTTGCTCTGATGGATGAACCTGTCTTAGATGCCATTTGTGCGAGACTGAGACAAGCTACTTACATTAAAGGAAGTAGAATTTTGAGTCAAGGTAGTGTGGTAGAGAAGATGGTATTCGTGGTGCGTGGCAAATTGGAGAGCATTGGAGAAGATGGTATTAGAATTCCTTTATCTGAAGGAGATGTTTGTGGTGAAGAACTTCTGACATGGTATCTTGAGCATTCTTCTGTCAGCGCAGGTATGAATCACCTTATTGGAGATCCTTTGCAGCAATCCGACCCACGCGCAAGTAATGTACTTTCTTTTCACTGTTATTTCCTCGAAGACGAAGACGAAGAAGAAGACTCCCTCATGAACCCTTCACACTCTTTTCTTATATATGTCTTGGTTTACTTTCAATATCTGCACTCTGAAACTATAAACAATTTGTGGTGGTTCCTTCTCACAGGTCACATCTCTTACCCCTCTTTCTATAACACCCTTGCTTTACCTGGAAACCTTTTTCAGGAAAATATGGAGGCACCACCACAGTCCCAAACACCAGAAAATGATTTTCTCAACAACTATGATAGCAACAATAAATATTTAGTTAAGTCTGGATCACTGGGAATGTGTCATGATGCATATTGTTTAACTTGCCCAATTTACCTCCAGGCTACCCTGCAAAGGAATTCAAACCCTTCGGATATGTTCAATGATAAGTTTCCCAATACCCTTCATGGGGATGCCAGCAGGAGTAGGGCAAAAAGGCTCCTTTTGTTCATTAAAAATCTTCCAATTATGAATCCACATAATAAACAGGTTCAACGATGGAATAAGTTTTTTTATATCTGTTGCTTGGTGACAGTTTTTGTGGGTCCATCATATGTCTTCATGCTCTATTTGCAGAAGGAAAATATGTGTATTTCTGCGGACCTAACTGATTCTCTGCTTTCTGAAACAATTTGGAGGTTGAATACTGCCATGCAGTGGGTAAACATTGTTTTGCAGTTTAGGATGGCCTACGTTTCTCATGAGTCATCTTCACGAGCTGCACATTTAATTGACCATCCCAAGAAAACTGCGCTTAAGTATCTGCAGACTTATTTTTTAATCGACTTATGCATTGCGGGTTCCCTCCCTGACTTATTGCTAGGACCACTTTATGACCTGGGATTTTTTGAAGAAACTAGCATCATATTTGATCGGGGAATAGAAATCTTTACGATGTATTTTCTGAGATTAGTCAGGTTGCTGCGAATTCGATGGTTTACAAGGGAAACGTCAACCCCGGCTAAAATCTTTAAAAATCTTCTCATCGTTGTGCCATTCGGCTATGTTGTTGGTTCCATCTGGTATGTATTTGGTATAGAGAGAGTTAATGAATGCTTGCTAAATGCCTGCAACAATATCAATTCCATTAAAACTACATGCTTAGCATTTACTTATTGTAGCAGTAGCGATGCACCTGGCCTCTGGAAAGATAATGAAAATGTCACTGCTTGTTTGAGTTCCTCTTCCGCTAGTCACTATGGGATCTTTCAAGATATTGTACCACTTTCTACTGAAACTAGTCTCACAAAAAAAATTTCATTTTCAATGTTTTGGGGCTTCAAGCAAATCATTACTCTAGCAGATAATCTAACTCCAAGCTCAAAATTTCCGTTGGAAGTGTATTTTACAATGGCCATCATGGGATTGGGACTTTGCTTTTTTACACTTCTCGTTACAAACATACAGAACCTTCTTCAGGCCGTTCAAAGCAGGAAGACAGAAATGGAATTTAGAGATCGTGATGTCGAGCAATGGATGAACCGTCTTAGATTACCAGAAGATTTAAGAAGGAGAATACGAATATTTATACGGTTTGATTTGCCAGCAACAAGGGGTGTCAATGAAGAAACGATTCTGGAGACTTTGCCAGATGATATCCAGACAGACATAAGACGCCATATCTTCAAATTTTTGAAGAAAGTTCAAATATTTAGCCTGATGAATGAGGCAATGTTAGGTGCCATTTGTGAGAGACTAAAACTAAAGAGATACATGATGGGAAGTAAAATTTTGAGTGAGAGGGGTTTTGTAGAGAAGATGATCTTTGTTGTGTGTGGGACGTTAGAGAGCGTTGCAGCAGATGAAACTAGAATTCTATCGGTTGGTGATGCTTGTGGACTAGAACTTCTCGCGTCGTATCTTGACCCTGATTCTGTCAGGACAGATTGTGAAAAGTTAAGCAACAGTTCAATAAGGTGCTTAACAAATGTAGAGGCCTTTACGCTTGGGCGTGCAGACCTTGAGGATGTCTTTAGTCTTTTCTCAAGATTCTTGCAGAACCCTCGTGTTCAAGGAGCAATAAGGTATCAATTGCCTCATCGGAGATTACATGCAGCTAAACGGATTCAGTCTGCATGGAGAAACAGGAGGAGAAGAAGCTCTGTTGAAACAGATAGCATTAGCATTCAAATTGAAAGAAACTCTGAGGGTTCATCATGA 3108 0.4015 MERVNQCFRNACQSSNIPGCLAFIDCGHSHVGDNQLGLSSNQWNNNADAIACWNSSSTGSFAYGIYNNAVPLTTQTDIVTKYIYALFWGLQQISTLAGNQTPSDFVYETLFTIAIIGMGLLLFALLIGNIQNFLQGLGRRRLEMQLRCGDVEQWMSHRRLPEYLRRRVREAERYSWTATRGVNEATLMENFLEDLQMDIRRHLFKFVKKVRIFALMDEPVLDAICARLRQATYIKGSRILSQGSVVEKMVFVVRGKLESIGEDGIRIPLSEGDVCGEELLTWYLEHSSVSAGMNHLIGDPLQQSDPRASNVLSFHCYFLEDEDEEEDSLMNPSHSFLIYVLVYFQYLHSETINNLWWFLLTGHISYPSFYNTLALPGNLFQENMEAPPQSQTPENDFLNNYDSNNKYLVKSGSLGMCHDAYCLTCPIYLQATLQRNSNPSDMFNDKFPNTLHGDASRSRAKRLLLFIKNLPIMNPHNKQVQRWNKFFYICCLVTVFVGPSYVFMLYLQKENMCISADLTDSLLSETIWRLNTAMQWVNIVLQFRMAYVSHESSSRAAHLIDHPKKTALKYLQTYFLIDLCIAGSLPDLLLGPLYDLGFFEETSIIFDRGIEIFTMYFLRLVRLLRIRWFTRETSTPAKIFKNLLIVVPFGYVVGSIWYVFGIERVNECLLNACNNINSIKTTCLAFTYCSSSDAPGLWKDNENVTACLSSSSASHYGIFQDIVPLSTETSLTKKISFSMFWGFKQIITLADNLTPSSKFPLEVYFTMAIMGLGLCFFTLLVTNIQNLLQAVQSRKTEMEFRDRDVEQWMNRLRLPEDLRRRIRIFIRFDLPATRGVNEETILETLPDDIQTDIRRHIFKFLKKVQIFSLMNEAMLGAICERLKLKRYMMGSKILSERGFVEKMIFVVCGTLESVAADETRILSVGDACGLELLASYLDPDSVRTDCEKLSNSSIRCLTNVEAFTLGRADLEDVFSLFSRFLQNPRVQGAIRYQLPHRRLHAAKRIQSAWRNRRRRSSVETDSISIQIERNSEGSS 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00524 1035 SMART cnmp_10 212 330 IPR000595 -
Viun4g00524 1035 SMART cnmp_10 866 992 IPR000595 -
Viun4g00524 1035 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 457 1019 - -
Viun4g00524 1035 Gene3D Jelly Rolls 864 979 IPR014710 -
Viun4g00524 1035 Gene3D Jelly Rolls 210 326 IPR014710 -
Viun4g00524 1035 SUPERFAMILY cAMP-binding domain-like 140 280 IPR018490 -
Viun4g00524 1035 SUPERFAMILY Voltage-gated potassium channels 475 794 - -
Viun4g00524 1035 SUPERFAMILY cAMP-binding domain-like 794 982 IPR018490 -
Viun4g00524 1035 CDD CAP_ED 212 291 IPR000595 -
Viun4g00524 1035 ProSiteProfiles cAMP/cGMP binding motif profile. 212 313 IPR000595 -
Viun4g00524 1035 Gene3D Helix hairpin bin 139 203 - -
Viun4g00524 1035 Pfam Ion transport protein 485 795 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun4g00524 1035 Gene3D Helix hairpin bin 795 858 - -
Viun4g00524 1035 CDD CAP_ED 866 974 IPR000595 -
Viun4g00524 1035 SUPERFAMILY Voltage-gated potassium channels 77 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00524 Viun-Chr4 3356603 3370777 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00524 408 942 Ion Channels AT3G17700 42.780 2.53e-123 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00524 K05391 - gmx:100785556 554.673