Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00520 ATGGCTAATTTTGAGAATGACAAGCGCCCAATGCTGTCAGATACAGATGCACAATCATACGATGAACCCTTGGATTCTAAATTCCGAAGGATGGTATCCAGGACTCAAAGCGCTTCAATTTCTATTCCTATGAGCTCCTTCGAGTCATATGAGAAAGAAACTAGCCTTGTGGGACATACTGGTCCACTTCAGAGCAAGAGAAAAACACCCTTTATGCATATGAGTGGTCCATTATATGCTACCACTGGAACTGGAAATCTTTTGCAGAAGCATGTTGTATCGGGAAACAAAGCAGATGACAGAAAGACAGATAATTTTGCTACTCTCCATGGCTCAAGTTCAAATTACCAAAATGGTGACTACGATAGAAAAAATGAACACTTACTAAGGTCTGGGCAACTGGGAATGTGCAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAATGCTTCGCAGCAAAGAAATCCAAAATCTTCTGCTAGATGGGATCCAAAGGATAATAAATGCATTGTTATCAACTGGCCATTGGCAACAGCACTTGCTTTATTTAGATGCGTGAATGATTTTGTTTATTTCCTTAACATTCTTCTCCAGTTTAGGTTAGCTTATGTTTCTCGTGAGTCGAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACCTAAAGGGTTATTTCCTCATTGACTTATTTGTTGTATTTCCTCTTCCTCAGATAATGTTATTATTCGTCCTACCAAATTCTTTGGGGGGAGCAAATTATGCCAAGAATCTTCTGCGTGCAGCGATATTAGTGCAATATTTTCCCAAGTTATTCAGGTTTCTGCCACTCCTGATCGGCCAATCTCCAACAGGATTCATTTTTGAGTCAGCCTGGGCAAATTTTATTATCAATCTTCTCATTTTTATGCTTGCCAGTCATGTTGTTGGCTCTTGCTGGTACCTCTTCGGTCTTCAGAGGGTTAATCAGTGTTTGCGGAATGCCTGCCATAGTTCTAATATACCTGGATGCATGAAGTTCATTGATTGTGGACGTGGCCATACTGACTTCACATCAGATCTGTGGATCAACAATACTGATGCTGGTGCTTGTATGGATTCCTCTGGTTTCACTTATGGGATTTATCAGAATGCTGTACCACTTACTATAGAAACTAGTGTAGTCAACAAATACGTGTATTCTCTTTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGTAATCTAAATCCTAGCTATTTTGTATGGGAAGTCCTTTTTACTATGGCCATCATAGGATCGGGACTCTTACTCTTTGCAATTCTCATTGGTAACATACAGAACTTTCTACAGGCTCTTGGACGGAGGAAACTGGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGGCGGTTACCTGAAGATCTGAGAAGGAGAGTAAGACAGGCTGAACGGTACAGTTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTTATGGAGAATTTACCAGAAGATCTGCAGAGAGACATAAGACGCCATCTCTTCAAATTTGTTAAGAAAATTCGGCTTTTTGCTCTGATGGATGAGCCTATATTAGATGCCATTTGTGAGAGACTAAGACAAAAGACACACATCAAAGGAAGTAAAATTCTAAGTCATGGTGGTCTGGTAGAAAAGATGGTATTCGTGGTGCGTGGTAAATTGGAGAGCATTGGAGAAGATGGAACAAGAATTCCTCTATCTGAAGGTGATGCTTGTGGTGAGGAACTTCTGACATGGTATCTTGAACATTCTTCAGTCAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGATTGGTCAGCAACAGGACAGTAAGGTGCTTAACAAATGTGGAGTCATTTTCACTCTCTGCTTCAGACCTTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGGAGTCCATGCGTCCAAGGAGCCCTAAGGTATGAGTCACCTTATTGGAGATCCCTTGCTGCAACCCGCATTCAAGTTGCATGGAGATACAGGAAGAAACGTCTAAGTCGTGTTAATTCCTCCCCAGCAGATTGA 2091 0.4161 MANFENDKRPMLSDTDAQSYDEPLDSKFRRMVSRTQSASISIPMSSFESYEKETSLVGHTGPLQSKRKTPFMHMSGPLYATTGTGNLLQKHVVSGNKADDRKTDNFATLHGSSSNYQNGDYDRKNEHLLRSGQLGMCNDPYCTTCPTYFNASQQRNPKSSARWDPKDNKCIVINWPLATALALFRCVNDFVYFLNILLQFRLAYVSRESRVVGAGDLVDHPKKIALHYLKGYFLIDLFVVFPLPQIMLLFVLPNSLGGANYAKNLLRAAILVQYFPKLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLASHVVGSCWYLFGLQRVNQCLRNACHSSNIPGCMKFIDCGRGHTDFTSDLWINNTDAGACMDSSGFTYGIYQNAVPLTIETSVVNKYVYSLFWGFQQISTLAGNLNPSYFVWEVLFTMAIIGSGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYSWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKIRLFALMDEPILDAICERLRQKTHIKGSKILSHGGLVEKMVFVVRGKLESIGEDGTRIPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLVSNRTVRCLTNVESFSLSASDLEEVTILFTRFLRSPCVQGALRYESPYWRSLAATRIQVAWRYRKKRLSRVNSSPAD 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00520 696 CDD CAP_ED 528 644 IPR000595 -
Viun4g00520 696 MobiDBLite consensus disorder prediction 9 23 - -
Viun4g00520 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 168 688 - -
Viun4g00520 696 Gene3D Jelly Rolls 526 650 IPR014710 -
Viun4g00520 696 SUPERFAMILY Voltage-gated potassium channels 173 456 - -
Viun4g00520 696 Pfam Ion transport protein 171 455 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun4g00520 696 SUPERFAMILY cAMP-binding domain-like 456 648 IPR018490 -
Viun4g00520 696 MobiDBLite consensus disorder prediction 1 23 - -
Viun4g00520 696 Gene3D - 170 453 - -
Viun4g00520 696 Gene3D Helix hairpin bin 455 520 - -
Viun4g00520 696 ProSiteProfiles cAMP/cGMP binding motif profile. 528 596 IPR000595 -
Viun4g00520 696 SMART cnmp_10 528 663 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00520 Viun-Chr4 3321557 3331431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00520 5 606 Ion Channels AT3G17700 52.232 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00520 K05391 - gmx:100795427 1231.85