Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00519 ATGGCTAATTTTGAGAATGACAAGCGCCCAATGCTGTCAGATACAGATGCACAATCATACGATGAACCCTTGGATTCTAAATTCCGAAGGATGGTATCCAGGACTCAAAGCGCTTCAATTTCTATTCCTATGAGCTCCTTCGAGTCATATGAGAAAGAAACTAGCCTTGTGGGACATACTGGTCCACTTCAGAGCAAGAGAAAAACACCCTTTATGCATATGAGTGGTCCATTATATGCTACCACTGGAACTGGAAATCTTTTGCAGAAGCATGTTGTATCGGGAAACAAAGCAGATGACAGAAAGACAGATAATTTTGCTACTCTCCATGGCTCAAGTTCAAATTACCAAAATGGTGACTACGATAGAAAAAATGAACACTTACTAAGGTCTGGGCAACTGGGAATGTGCAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAATGCTTCGCAGCAAAGAAATCCAAAATCTTCTGCTAGATGGGATCCAAAGTTCCATAATGCTCTTTATGGGGATGCCAAGAGTTTTGTGAGGAAACTTCTTTCTTTCTTTTCTTCTTATGTTCCTGGAGTTATGAACCCTCATGCTAAAATTGTACAAAAGTGGAACAAATTTTTGGCCATTTTTTGCTTAATTGGTATTTTTGTGGACCCATTGTTTTTCTTTTTACTATATGTGGAGAAGGTACGCTTATTTTCTACCATTAACTACAAAGTAGCAAGTTCTAGATGTCACTCTTTCTATTTACAAATTTACTCTTCATTTTTCCTGTTCTTTATGCAGGATAATAAATGCATTGTTATCAACTGGCCATTGGCAACAGCACTTGCTTTATTTAGATGCGTGAATGATTTTGTTTATTTCCTTAACATTCTTCTCCAGTTTAGGTTAGCTTATGTTTCTCGTGAGTCGAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACCTAAAGGGTTATTTCCTCATTGACTTATTTGTTGTATTTCCTCTTCCTCAGATAATGTTATTATTCGTCCTACCAAATTCTTTGGGGGGAGCAAATTATGCCAAGAATCTTCTGCGTGCAGCGATATTAGTGCAATATTTTCCCAAGTTATTCAGGTTTCTGCCACTCCTGATCGGCCAATCTCCAACAGGATTCATTTTTGAGTCAGCCTGGGCAAATTTTATTATCAATCTTCTCATTTTTATGCTTGCCAGTCATGTTGTTGGCTCTTGCTGGTACCTCTTCGGTCTTCAGAGGGTTAATCAGTGTTTGCGGAATGCCTGCCATAGTTCTAATATACCTGGATGCATGAAGTTCATTGATTGTGGACGTGGCCATACTGACTTCACATCAGATCTGTGGATCAACAATACTGATGCTGGTGCTTGTATGGATTCCTCTGGTTTCACTTATGGGATTTATCAGAATGCTGTACCACTTACTATAGAAACTAGTGTAGTCAACAAATACGTGTATTCTCTTTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGTAATCTAAATCCTAGCTATTTTGTATGGGAAGTCCTTTTTACTATGGCCATCATAGGATCGGGACTCTTACTCTTTGCAATTCTCATTGGTAACATACAGAACTTTCTACAGGCTCTTGGACGGAGGAAACTGGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGGCGGTTACCTGAAGATCTGAGAAGGAGAGTAAGACAGGCTGAACGGTACAGTTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTTATGGAGAATTTACCAGAAGATCTGCAGAGAGACATAAGACGCCATCTCTTCAAATTTGTTAAGAAAATTCGGCTTTTTGCTCTGATGGATGAGCCTATATTAGATGCCATTTGTGAGAGACTAAGACAAAAGACACACATCAAAGGAAGTAAAATTCTAAGTCATGGTGGTCTGGTAGAAAAGATGGTATTCGTGGTGCGTGGTAAATTGGAGAGCATTGGAGAAGATGGAACAAGAATTCCTCTATCTGAAGGTGATGCTTGTGGTGAGGAACTTCTGACATGGTATCTTGAACATTCTTCAGTCAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGATTGGTCAGCAACAGGACAGTAAGGTGCTTAACAAATGTGGAGTCATTTTCACTCTCTGCTTCAGACCTTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGGAGTCCATGCGTCCAAGGAGCCCTAAGGTATGAGTCACCTTATTGGAGATCCCTTGCTGCAACCCGCATTCAAGTTGCATGGAGATACAGGAAGAAACGTCTAAGTCGTGTTAATTCCTCCCCAGCAGATTGA 2382 0.4055 MANFENDKRPMLSDTDAQSYDEPLDSKFRRMVSRTQSASISIPMSSFESYEKETSLVGHTGPLQSKRKTPFMHMSGPLYATTGTGNLLQKHVVSGNKADDRKTDNFATLHGSSSNYQNGDYDRKNEHLLRSGQLGMCNDPYCTTCPTYFNASQQRNPKSSARWDPKFHNALYGDAKSFVRKLLSFFSSYVPGVMNPHAKIVQKWNKFLAIFCLIGIFVDPLFFFLLYVEKVRLFSTINYKVASSRCHSFYLQIYSSFFLFFMQDNKCIVINWPLATALALFRCVNDFVYFLNILLQFRLAYVSRESRVVGAGDLVDHPKKIALHYLKGYFLIDLFVVFPLPQIMLLFVLPNSLGGANYAKNLLRAAILVQYFPKLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLASHVVGSCWYLFGLQRVNQCLRNACHSSNIPGCMKFIDCGRGHTDFTSDLWINNTDAGACMDSSGFTYGIYQNAVPLTIETSVVNKYVYSLFWGFQQISTLAGNLNPSYFVWEVLFTMAIIGSGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYSWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKIRLFALMDEPILDAICERLRQKTHIKGSKILSHGGLVEKMVFVVRGKLESIGEDGTRIPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLVSNRTVRCLTNVESFSLSASDLEEVTILFTRFLRSPCVQGALRYESPYWRSLAATRIQVAWRYRKKRLSRVNSSPAD 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00519 793 ProSiteProfiles cAMP/cGMP binding motif profile. 625 693 IPR000595 -
Viun4g00519 793 MobiDBLite consensus disorder prediction 9 23 - -
Viun4g00519 793 Pfam Ion transport protein 227 552 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun4g00519 793 CDD CAP_ED 625 741 IPR000595 -
Viun4g00519 793 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 137 785 - -
Viun4g00519 793 SUPERFAMILY cAMP-binding domain-like 553 745 IPR018490 -
Viun4g00519 793 SUPERFAMILY Voltage-gated potassium channels 198 553 - -
Viun4g00519 793 MobiDBLite consensus disorder prediction 1 23 - -
Viun4g00519 793 SMART cnmp_10 625 760 IPR000595 -
Viun4g00519 793 Gene3D - 247 550 - -
Viun4g00519 793 Gene3D Helix hairpin bin 553 617 - -
Viun4g00519 793 Gene3D Jelly Rolls 623 747 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00519 Viun-Chr4 3321555 3331431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00519 5 703 Ion Channels AT3G17700 58.274 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00519 K05391 - gmx:100795427 1405.96