Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00518 ATGGCTAATTTTGAGAATGACAAGCGCCCAATGCTGTCAGATACAGATGCACAATCATACGATGAACCCTTGGATTCTAAATTCCGAAGGATGGTATCCAGGACTCAAAGCGCTTCAATTTCTATTCCTATGAGCTCCTTCGAGTCATATGAGAAAGAAACTAGCCTTGTGGGACATACTGGTCCACTTCAGAGCAAGAGAAAAACACCCTTTATGCATATGAGTGGTCCATTATATGCTACCACTGGAACTGGAAATCTTTTGCAGAAGCATGTTGTATCGGGAAACAAAGCAGATGACAGAAAGACAGATAATTTTGCTACTCTCCATGGCTCAAGTTCAAATTACCAAAATGGTGACTACGATAGAAAAAATGAACACTTACTAAGGTCTGGGCAACTGGGAATGTGCAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAATGCTTCGCAGCAAAGAAATCCAAAATCTTCTGCTAGATGGGATCCAAAGTTCCATAATGCTCTTTATGGGGATGCCAAGAGTTTTGTGAGGAAACTTCTTTCTTTCTTTTCTTCTTATGTTCCTGGAGTTATGAACCCTCATGCTAAAATTGTACAAAAGTGGAACAAATTTTTGGCCATTTTTTGCTTAATTGGTATTTTTGTGGACCCATTGTTTTTCTTTTTACTATATGTGGAGAAGGATAATAAATGCATTGTTATCAACTGGCCATTGGCAACAGCACTTGCTTTATTTAGATGCGTGAATGATTTTGTTTATTTCCTTAACATTCTTCTCCAGTTTAGGTTAGCTTATGTTTCTCGTGAGTCGAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACCTAAAGGGTTATTTCCTCATTGACTTATTTGTTGTATTTCCTCTTCCTCAGATAATGTTATTATTCGTCCTACCAAATTCTTTGGGGGGAGCAAATTATGCCAAGAATCTTCTGCGTGCAGCGATATTAGTGCAATATTTTCCCAAGTTATTCAGGTTTCTGCCACTCCTGATCGGCCAATCTCCAACAGGATTCATTTTTGAGTCAGCCTGGGCAAATTTTATTATCAATCTTCTCATTTTTATGCTTGCCAGTCATGTTGTTGGCTCTTGCTGGTACCTCTTCGGTCTTCAGAGGGTTAATCAGTGTTTGCGGAATGCCTGCCATAGTTCTAATATACCTGGATGCATGAAGTTCATTGATTGTGGACGTGGCCATACTGACTTCACATCAGATCTGTGGATCAACAATACTGATGCTGGTGCTTGTATGGATTCCTCTGGTTTCACTTATGGGATTTATCAGAATGCTGTACCACTTACTATAGAAACTAGTGTAGTCAACAAATACGTGTATTCTCTTTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGTAATCTAAATCCTAGCTATTTTGTATGGGAAGTCCTTTTTACTATGGCCATCATAGGATCGGGACTCTTACTCTTTGCAATTCTCATTGGTAACATACAGAACTTTCTACAGGCTCTTGGACGGAGGAAACTGGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGGCGGTTACCTGAAGATCTGAGAAGGAGAGTAAGACAGGCTGAACGGTACAGTTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTTATGGAGAATTTACCAGAAGATCTGCAGAGAGACATAAGACGCCATCTCTTCAAATTTGTTAAGAAAATTCGGCTTTTTGCTCTGATGGATGAGCCTATATTAGATGCCATTTGTGAGAGACTAAGACAAAAGACACACATCAAAGGAAGTAAAATTCTAAGTCATGGTGGTCTGGTAGAAAAGATGGTATTCGTGGTGCGTGGTAAATTGGAGAGCATTGGAGAAGATGGAACAAGAATTCCTCTATCTGAAGGTGATGCTTGTGGTGAGGAACTTCTGACATGGTATCTTGAACATTCTTCAGTCAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGATTGGTCAGCAACAGGACAGTAAGGTGCTTAACAAATGTGGAGTCATTTTCACTCTCTGCTTCAGACCTTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGGAGTCCATGCGTCCAAGGAGCCCTAAGGTATGAGTCACCTTATTGGAGATCCCTTGCTGCAACCCGCATTCAAGTTGCATGGAGATACAGGAAGAAACGTCTAAGTCGTGTTAATTCCTCCCCAGCAGATTGA 2283 0.4095 MANFENDKRPMLSDTDAQSYDEPLDSKFRRMVSRTQSASISIPMSSFESYEKETSLVGHTGPLQSKRKTPFMHMSGPLYATTGTGNLLQKHVVSGNKADDRKTDNFATLHGSSSNYQNGDYDRKNEHLLRSGQLGMCNDPYCTTCPTYFNASQQRNPKSSARWDPKFHNALYGDAKSFVRKLLSFFSSYVPGVMNPHAKIVQKWNKFLAIFCLIGIFVDPLFFFLLYVEKDNKCIVINWPLATALALFRCVNDFVYFLNILLQFRLAYVSRESRVVGAGDLVDHPKKIALHYLKGYFLIDLFVVFPLPQIMLLFVLPNSLGGANYAKNLLRAAILVQYFPKLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLASHVVGSCWYLFGLQRVNQCLRNACHSSNIPGCMKFIDCGRGHTDFTSDLWINNTDAGACMDSSGFTYGIYQNAVPLTIETSVVNKYVYSLFWGFQQISTLAGNLNPSYFVWEVLFTMAIIGSGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYSWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKIRLFALMDEPILDAICERLRQKTHIKGSKILSHGGLVEKMVFVVRGKLESIGEDGTRIPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLVSNRTVRCLTNVESFSLSASDLEEVTILFTRFLRSPCVQGALRYESPYWRSLAATRIQVAWRYRKKRLSRVNSSPAD 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00518 760 Gene3D - 208 517 - -
Viun4g00518 760 Gene3D Helix hairpin bin 519 584 - -
Viun4g00518 760 MobiDBLite consensus disorder prediction 9 23 - -
Viun4g00518 760 ProSiteProfiles cAMP/cGMP binding motif profile. 592 660 IPR000595 -
Viun4g00518 760 Gene3D Jelly Rolls 590 714 IPR014710 -
Viun4g00518 760 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 137 752 - -
Viun4g00518 760 SMART cnmp_10 592 727 IPR000595 -
Viun4g00518 760 SUPERFAMILY Voltage-gated potassium channels 198 520 - -
Viun4g00518 760 MobiDBLite consensus disorder prediction 1 23 - -
Viun4g00518 760 CDD CAP_ED 592 708 IPR000595 -
Viun4g00518 760 Pfam Ion transport protein 204 519 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun4g00518 760 SUPERFAMILY cAMP-binding domain-like 520 712 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00518 Viun-Chr4 3321554 3331204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00518 5 670 Ion Channels AT3G17700 61.128 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00518 K05391 - gmx:100795427 1422.91