Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00505 ATGGCTAATTTTGAGAGAGATGATGTGGCAATTCTATCAGATTGTCATCCCCAAGTATCAGTTGAAGTCGTTGATTCTGGATTCCCAAGGCATGTATCTAGGACTCGAAGTGTATCAATTTCTATTCCCGCGACACTCACAGAGCCATATGAAAGAGATACTAATCTTGTGGGATACACTGGTCCCTTACGGATTCAGAGAATAACTCCATTTAATCAGATGAGTGGTCCATTGCATGCTACTAATAGACCTGGAAACCTTTCTCGGCAGAATAAAGTGGCACCCGAGTCACAAGCAGAAGAAAGTAAGACAGAAAATTTTTCTTCATGCTGTGGCGTCATGGGTGAAAATGATTTGCAGAACTATGCTTGCAAGAATGAACATTTAGTTAGGTCTGGTCCACTGGGAATGTGCAGTGATCCATATTGTACAACGTGCCCAACTTACTTCAAGGCTATTCAGAAAAGTAGTTCAAATGCTTCGGGTATATTTAAACATGAGTTTCGGAATACTCTTTACGAGGATGCCAAGAATTGGGCGAGAAGACTTTTTACTTTCTTGATTCCCCATGTTCCTAGAGTTATGAATCCTCACAATAAACTTGTACAACAATGGAATCAATTTTTTGCAATATGTTGCTTGGTGGCAATTTTTGTGGATCCGTTATTTTTCTTCTTGCTCTCTGTGCAGAAGAAAAATAAATGTATTGTTATAAACTGGGGTTTTACAAAACTTCTTGTTGCACTTAGAAGCATGAATGATTTCATACACTTCCTAAACATTATTCTTCAGTTTAGGTTGGCTTATGTGGCTCCTGAGTCTAGGGTGGTTGGTGCTGGGGAGTTAGTTGATCATCCAAAGAAAATAGCTCTTCATTACTTTAAGACATCTTTCTTCATTGACTTATTTGTTGTTCTTCCACTTCCTCAGATATTCATATTGTTTGTCCTACCAACGCACTTAGGGACAGGGTCAACAGGAGCAAACTATGCAAATAACCTTTTGCGTATTGTGATTCTCGTTCAGCATATCCCTAGACTATGTAGATTTCTTCCTATGATATTTTCTCCAGCTGGATTTGTATTTGAGTCTCCGTGGGCAAATTTCTTTATAAATCTTTTCACCTTTGTACTGTCTGGCCATGTTGTTGGATCCTGGTGGTACCTCTTCAGTTTGCAGAGGGTTATTCAGTGTCTACGAGACGCCTGTGGAAACACACATATTCCTGGATGCACAAAATTCATTGATTGTGGACATGGAAAAACTGAAGCATATCAAAATAATGAAAGTTGGAGAAATTGGACAAACAATGCTGTTGCAAGTGCTTGTTTTACTGAAGATGGTTTTCGTGATGGTTATGGTATCTTTCTCAAAGCTGTCAACCTTACCGCACATCCTAATCTGTCTACTAGATATTTCTATTCATCGTTTTGGGGATTTCAGCAAATTAGTACACTGACTGGGAATTTAGTCCCTAGCTATTTTGTTCCCGAAATTCTTTTTACTAAGGCCATTCTTGGGTCAGGACTGTTGCTGTTTGCTCTTCTCATTGGAAACATACAGAACATTCTTCAGGCTCTTGGACGCAGGAACCTAGAGATGTCACTTAGACGACGTGATGTTGAGAAATGGATGAGCCACCGGCGCTTAGGAGACAATCTAAGAAGGAGAGTGCGACAGGCTGAACGATATAACTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTCCTGGAGAATTTGCCAGAAGACCTCCAAAGGGAAATTAGACGTCATCTCTTCACATTTATTAAGAAAGTTCGAATTTTTGCCTTATTGGATGAGCCTATCTTGGATGCCATATGTGAGAGGCTAAGACAGAAAACATATATCAAAGGAAGCAAAATTTTGTATGATGGTGGTTTGGTAGAGAAGATGGTTTTTATTGTGCGTGGAAAATTGGAGAGCGTTGGCGAAGATGGAATCAGTGCTCCCCTTTATGAAGGGAGTGTCTGTGGCGAAGAACTTCTGACATGGTGTCTTGAGCATCCCTTAACAAGCAAAGGTTGCAGAAAAGCAAGGATTCCAAGGCAAAAGCTGGTTAGTAACAGAAGAGTAATTTGCTTAACAAATGTGGAGGCATTTTCTCTCAGAGCAGCAGACCTTGAAGAAGTTACAGGCCTATTTGCAAGATTCTTTAGGAGTCCCCGTGTTCGAGGAGCCATAAGGTATGAGTCACCTTATTGGAGATGCTTTGCAGCAACAAGCATTCAGGTTGCATGGAAATACAGAATGAAATGTCTTCGTCGTTCTAAAACTGCATAA 2304 0.4045 MANFERDDVAILSDCHPQVSVEVVDSGFPRHVSRTRSVSISIPATLTEPYERDTNLVGYTGPLRIQRITPFNQMSGPLHATNRPGNLSRQNKVAPESQAEESKTENFSSCCGVMGENDLQNYACKNEHLVRSGPLGMCSDPYCTTCPTYFKAIQKSSSNASGIFKHEFRNTLYEDAKNWARRLFTFLIPHVPRVMNPHNKLVQQWNQFFAICCLVAIFVDPLFFFLLSVQKKNKCIVINWGFTKLLVALRSMNDFIHFLNIILQFRLAYVAPESRVVGAGELVDHPKKIALHYFKTSFFIDLFVVLPLPQIFILFVLPTHLGTGSTGANYANNLLRIVILVQHIPRLCRFLPMIFSPAGFVFESPWANFFINLFTFVLSGHVVGSWWYLFSLQRVIQCLRDACGNTHIPGCTKFIDCGHGKTEAYQNNESWRNWTNNAVASACFTEDGFRDGYGIFLKAVNLTAHPNLSTRYFYSSFWGFQQISTLTGNLVPSYFVPEILFTKAILGSGLLLFALLIGNIQNILQALGRRNLEMSLRRRDVEKWMSHRRLGDNLRRRVRQAERYNWAATRGVNEEMLLENLPEDLQREIRRHLFTFIKKVRIFALLDEPILDAICERLRQKTYIKGSKILYDGGLVEKMVFIVRGKLESVGEDGISAPLYEGSVCGEELLTWCLEHPLTSKGCRKARIPRQKLVSNRRVICLTNVEAFSLRAADLEEVTGLFARFFRSPRVRGAIRYESPYWRCFAATSIQVAWKYRMKCLRRSKTA 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00505 767 ProSiteProfiles cAMP/cGMP binding motif profile. 602 680 IPR000595 -
Viun4g00505 767 SUPERFAMILY Voltage-gated potassium channels 197 525 - -
Viun4g00505 767 SMART cnmp_10 602 737 IPR000595 -
Viun4g00505 767 MobiDBLite consensus disorder prediction 71 101 - -
Viun4g00505 767 Gene3D Helix hairpin bin 530 594 - -
Viun4g00505 767 SUPERFAMILY cAMP-binding domain-like 530 725 IPR018490 -
Viun4g00505 767 Gene3D Jelly Rolls 600 724 IPR014710 -
Viun4g00505 767 Gene3D - 182 527 - -
Viun4g00505 767 CDD CAP_ED 602 718 IPR000595 -
Viun4g00505 767 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 138 759 - -
Viun4g00505 767 Pfam Ion transport protein 205 529 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00505 Viun-Chr4 3303508 3318288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00505 5 682 Ion Channels AT3G17700 59.590 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00505 K05391 - gmx:100795955 1256.12