Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00501 ATGGTGATCACATCCACTGCTACACACCCAGATGAACAAGCACAGAGTATATTTTCTACCTTTGCTTCCAGATATGTGCGTGAACCTATTCCCAGGTTCAAGATGCCAGAGAAATCAATACCAAAGGATGCTGCTTATCAGATAATAAACGATGAGTTGATGCTGGATGGCACACCAAGGCTCAACTTGGCCTCATTTGTGACCACATGGATGGAGCCTGAGTGTGACAAGCTCATAATGGCTTCACTTAACAAGAACTATGTTGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGAACCGGTGTGTAAATATAATAGCAAATCTATTCCACGCTCCTATAAATGAAGATGAGACTGCAGTAGGTGTGGGAACTGTGGGGTCATCAGAGGCAATAATGTTAGCAGGTTTGGCTTTTAAAAGGAAATGGCAGACCAAGAGAAAAGCTGAAGGAAAACCATATGACAAGCCTAACATAGTTACTGGGGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCAAGGTACTTTGAGGTAGAGCTGAAGGAAGTGAAACTCAGTGAGGGATACTATGTGATGGACCCTGTGAAAGCAGTTGAACTGGTGGATGAGAACACTATCTGTGTTGCAGCCATTTTGGGGTCAACTATGACTGGAGAGTTTGAGGATGTGAAACTTCTCAATGAACTTCTCACAGAAAAGAACAAAGAGACAGGTTGGGATACCCCAATTCATGTAGATGCTGCCAGTGGGGGGTTTATTGCTCCATTTCTCTATCCTGATCTAGAATGGGATTTTCGTTTGCCATTGGTGAAAAGCATCAATGTTAGTGGCCACAAGTATGGTCTTGTCTACCCTGGTGTTGGTTGGGTTGTCTGGAGGAGTAAGGATGATTTGCCAGATGAACTTGTTTTCCACATAAATTATCTTGGTTCTGATCAGCCAACTTTCACATTGAATTTCTCTAAAGGATCCAGTCAAATTATTGCACAATATTACCAGTTTATCCGGCTTGGCTTTGAGGGTTACAAAAACATCATGGAAAATTGCTTGGAGAATACAAGAGTTCTGAAAGAGGGAATTGAGAGAACAGGGAGGTTTAACATCATCTCCAAGGATATAGGGGTGCCCCTTTTGGCCTTCTCTTTGAAAGAAGACAGTAGCCAACACTCAGTGTTTGAGATATCAGACCAGCTGAGAAAATTTGGGTGGATAGTTCCAGCCTACACAATGCCACCAGATGCACAACACATTGCAGTTCTCAGGGTGGTGGTGAGGGAGGATTTCAGCTGTGGCTTGGCTCAGAGACTTGTTTCTGACATAGAAAAAGTTATGAAGCTCTTGGCCTCACTTCCAAGCACTGTCTCTAACAAAACTGCTCATGTCACAGCCATCACCAATGAGACTAGTGAGAAGATAAAGAAGAGTGCAACAGAGACTCAGAAAGAGATTGTTTTGTACTGGAAGAAACTTGTGCATGGCAAGAAACTTGGAGCATGCTAG 1503 0.4325 MVITSTATHPDEQAQSIFSTFASRYVREPIPRFKMPEKSIPKDAAYQIINDELMLDGTPRLNLASFVTTWMEPECDKLIMASLNKNYVDMDEYPVTTELQNRCVNIIANLFHAPINEDETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVELVDENTICVAAILGSTMTGEFEDVKLLNELLTEKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCLENTRVLKEGIERTGRFNIISKDIGVPLLAFSLKEDSSQHSVFEISDQLRKFGWIVPAYTMPPDAQHIAVLRVVVREDFSCGLAQRLVSDIEKVMKLLASLPSTVSNKTAHVTAITNETSEKIKKSATETQKEIVLYWKKLVHGKKLGAC 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00501 500 CDD DOPA_deC_like 62 443 - -
Viun4g00501 500 FunFam Glutamate decarboxylase 364 452 - -
Viun4g00501 500 FunFam Glutamate decarboxylase 6 68 - -
Viun4g00501 500 Gene3D - 69 363 IPR015421 GO:0003824
Viun4g00501 500 Gene3D - 1 68 - -
Viun4g00501 500 FunFam Glutamate decarboxylase 69 363 - -
Viun4g00501 500 NCBIfam glutamate decarboxylase 19 448 IPR010107 GO:0004351|GO:0006536|GO:0030170
Viun4g00501 500 Gene3D - 364 452 - -
Viun4g00501 500 PANTHER GLUTAMATE DECARBOXYLASE 1 500 IPR010107 GO:0004351|GO:0006536|GO:0030170
Viun4g00501 500 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Viun4g00501 500 SUPERFAMILY PLP-dependent transferases 10 448 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00501 Viun-Chr4 3278050 3281296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00501 1 496 Calmodulin-binding Proteins AT5G17330 76.984 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00501 K01580 - gmx:100796475 924.85