Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00495 ATGTGCAGTAGAGGCCATTGGAGGCCAGCTGAGGATGAGAAGCTCCGAGAATTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAGAAGCTTCGAGGAAGATCAGGGAAAAGCTGTAGGTTGAGATGGTTCAATCAATTGGATCCAAGAATAAACAGAAGTCCTTTTACGGAGGAAGAAGAAGAGAGGCTTCTTGCTTCTCACAGGATTCATGGGAACAGATGGGCTGTGATTGCAAGACACTTCCCAGGAAGAACTGATAACGCTGTGAAAAACCATTGGCATGTGATGATGGCGAGGATTCGGAGAGAAAGGTCCAAAGTTTATAACACCAAACACCCACTTTTCCCTCCAAACCTTGACACCGATTTTCAGACTGATTCTATCCCTTCTTTTGTTGAGAAATATTATGAAAAGTTCAGTCATCACCACCACCACCACCACCACCCTTGTGTCACACACACACCTTTTCACTTTCCCAAGAAGTTTCACTTTCAAGATCCAACTTCTGCTTCCACACTGCCTCCAGAGAAGAGTGAATCAGTGGAGTTCTATGATTTTCTTCAAGTAAATACCGATTCCAATAAAAGTGAAGTGACAGACATAGCCAGAAGAGACGAAGAGGAAGTGAGTCAAGAAGATGGTGTGGAACTGAAGAACATTGGTGTTCCATTCATTGATTTTTTGTCTTCTGGAACCTGCTAA 714 0.4384 MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERSKVYNTKHPLFPPNLDTDFQTDSIPSFVEKYYEKFSHHHHHHHHPCVTHTPFHFPKKFHFQDPTSASTLPPEKSESVEFYDFLQVNTDSNKSEVTDIARRDEEEVSQEDGVELKNIGVPFIDFLSSGTC 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00495 237 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Viun4g00495 237 Gene3D - 4 55 - -
Viun4g00495 237 Pfam Myb-like DNA-binding domain 7 67 - -
Viun4g00495 237 Gene3D - 57 117 - -
Viun4g00495 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Viun4g00495 237 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Viun4g00495 237 SMART sant 55 103 IPR001005 -
Viun4g00495 237 SMART sant 3 52 IPR001005 -
Viun4g00495 237 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Viun4g00495 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Viun4g00495 237 CDD SANT 7 48 IPR001005 -
Viun4g00495 237 CDD SANT 58 101 IPR001005 -
Viun4g00495 237 PANTHER MYB PROTEIN-RELATED 4 171 - -
Viun4g00495 237 FunFam MYB transcription factor 4 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00495 Viun-Chr4 3242632 3245799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00495 1 235 MYB Transcription Factor Family AT1G17950 57.255 4.13e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun4g00495 Myb_DNA-bind_6 9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00495 K09422 - gmx:100811746 383.259