Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00471 ATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGCCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACTCCAGATCCAGATGCAGAGGTGGTGTCCCTCTCGCCCAAGACTTTGTTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCGTGGAAGCTATTGAAGAGAGAGACACCGGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAACCAACCTGTTTGCACCATGACCCTTGTCATGCCTTGGGTGATCTTGTTGGGATAAAGAAGCATTTCAGGAGAAAGCACAGCAATCACAAACAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGCGGCACCCGGGGCCACTCCTGTGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCAGAATCTCAGCCACTTCAACCCTCTGCGTGCCTTTCTAGAACAGCCTCAAGCCCAAGTCCTTCAAGCGAAACCAATTTCAGCACAGCTCCTTGGCCAACAAGGATCATAATACCAAAGCCAACAGAACCACCCACAATTTTCATGAATAACCCTACTGCTCATAATATCATCACTGCTGAAACCTCATCCAAGAACCACAAACTCCACCCCAACTTGGATCTCCAACTCTCAACTCCCACCAATACCAACAACAACAACAACAACATCATCATCAACAACAACAACAACAGTTCAAATACTGCAAACCCCATCGATGCTTCCATATCAACATCACTATCACCTAAGAGGGATCATCATCATCATCATGAGAACCACTCAACCCATCTGCAACTCTCAATTGGGTCATCAGATGTGAGTGACAAAAATGAATCAAACAGGAACTCATCGGAGAAGAGCAGCAACAGCAACAATGGGAAGCCGTCCAACATGGCCTTGTTGAGGGTTCAAGAGCAAGCTAGGGAGCACTTGAGGATAGCCATGGCTGAGAAAGCATATGCTGAGGAAGCAAGGAAACAAGCCAAGAGGCAGATTGAACTTGCGGAACAAGAGTTCACAAACGCCAAGAGGATAAGACAACAGGCACAAGCCGAACTAGACAAGGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCCACGCTTGCAAACAACAATTCCAAGCTCGAAATGCAACCCCCGACGAGAATTCCTTGGTCTTGAGCTACGTGTCTTCTGCCATAACCACAGAAGGAGGAGAAGTCGAAAACGATAATGGAAAAGAGCATGGCAAAAACAACTAA 1434 0.4763 MLANNLSPSSVPTSEPFPCTENATATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRIIIPKPTEPPTIFMNNPTAHNIITAETSSKNHKLHPNLDLQLSTPTNTNNNNNNIIINNNNNSSNTANPIDASISTSLSPKRDHHHHHENHSTHLQLSIGSSDVSDKNESNRNSSEKSSNSNNGKPSNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCHACKQQFQARNATPDENSLVLSYVSSAITTEGGEVENDNGKEHGKNN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00471 477 FunFam protein indeterminate-domain 12-like 36 104 - -
Viun4g00471 477 MobiDBLite consensus disorder prediction 252 351 - -
Viun4g00471 477 MobiDBLite consensus disorder prediction 194 220 - -
Viun4g00471 477 Gene3D Classic Zinc Finger 119 195 - -
Viun4g00471 477 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Viun4g00471 477 MobiDBLite consensus disorder prediction 1 44 - -
Viun4g00471 477 MobiDBLite consensus disorder prediction 317 351 - -
Viun4g00471 477 MobiDBLite consensus disorder prediction 1 24 - -
Viun4g00471 477 MobiDBLite consensus disorder prediction 252 300 - -
Viun4g00471 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Viun4g00471 477 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Viun4g00471 477 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Viun4g00471 477 MobiDBLite consensus disorder prediction 193 232 - -
Viun4g00471 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 416 IPR031140 -
Viun4g00471 477 Gene3D Classic Zinc Finger 35 97 - -
Viun4g00471 477 Coils Coil 365 420 - -
Viun4g00471 477 SMART c2h2final6 134 161 IPR013087 -
Viun4g00471 477 SMART c2h2final6 98 128 IPR013087 -
Viun4g00471 477 SMART c2h2final6 57 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00471 Viun-Chr4 3116479 3119900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00471 20 467 C2H2 Transcription Factor Family AT2G01940 49.024 2.30e-128 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun4g00471 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00471 K25871 - gmx:100800187 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00020 3 90648 93333 Viun4g00471 4 3116479 3119900 PCT