Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00467 ATGTCCATTCTCGTCATTCTCCCACCATCTTCTCTTCACCTATACACACCAAATAAATACTCAAACCTCCACCCTTTCACACACACTAACATCATGGAAAACTCTTCTTCATCTTCATCTTCAAACTCTATCTATCGAGAGTGTCTCCGCAACCATGCAGCGAGCCTCGGCAGCTACGCTACTGATGGTTGCGGAGAATTCACTCTCGATATCGACGTCTCCTCTTCTTCCCTCCAGTGTGCTGCTTGCGGTTGTCACCGCAACTTCCACCGCAAGGTGACGTGTCCCGGTGTGATGGAAGGTCTGCAGACTGGAGGGAGTGGAGATATGATGGAATATTCGGGAGGAGACGTCGGGAGAATGGAAATGGGGGAGAGGAGCAGCAGGAAGAGGTTCAGGACGAAGTTCAGTGCAGAGCAGAAAGAGAAGATGCTGGCGTTTGCAGAGAAGCTGGGGTGGAAGCTGCAGAGGAAAGAGGTGGATGATGAGATTGAGAGGTTCTGTAAAAGTGTTGGAGTCACAAGACAGGTTTTCAAGGTGTGGATGCATAACCATAAGAACAACTCTAACTCATCTAATTCTTCTGCTAATCTTTCTTCCCTCACTCAGTGA 612 0.4853 MSILVILPPSSLHLYTPNKYSNLHPFTHTNIMENSSSSSSSNSIYRECLRNHAASLGSYATDGCGEFTLDIDVSSSSLQCAACGCHRNFHRKVTCPGVMEGLQTGGSGDMMEYSGGDVGRMEMGERSSRKRFRTKFSAEQKEKMLAFAEKLGWKLQRKEVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNSSNSSANLSSLTQ 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00467 203 FunFam Zinc-finger homeodomain protein 2 117 191 - -
Viun4g00467 203 SUPERFAMILY Homeodomain-like 121 188 IPR009057 -
Viun4g00467 203 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 188 - -
Viun4g00467 203 Gene3D - 114 193 - -
Viun4g00467 203 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 45 93 IPR006456 -
Viun4g00467 203 Pfam ZF-HD protein dimerisation region 44 94 IPR006456 -
Viun4g00467 203 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 92 IPR006456 -
Viun4g00467 203 NCBIfam homeobox domain, ZF-HD class 129 187 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00467 Viun-Chr4 3054296 3055344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00467 45 187 ZF-HD Transcription Factor Family AT4G24660 45.238 3.68e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun4g00467 ZF-HD_dimer 6.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00467 - - vun:114182488 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00021 3 102891 103610 Viun4g00467 4 3054296 3055344 PCT