Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00454 ATGTCATCCATCCGCAACTGGGGTTACTATGAACCGGCCACATCGTTTAAGAGCCACCTGGGGCTCCAGCTGATGTCATCCATGCCGGAAAAGCCTTTAATCGGAGGGCGCAATGCTGCAGTTTTATCTGGCACAAATGGGGCATTTCACCACAGAGACATTGGTATGTCCCACGCTACATACCCTATGGAATACACGAGGGATGCTTGGATTAGTAGTTACAGAGACAAGTATATGAATATGATACCTACAAATCATAACTATGGTGGTATTCCGGAGACATCTTCGGCACATCAAATTCAAATGATTCCACCGCCGGAGTTGCCGAAGGAAGAAAGGGAAGTGGAAGAGGAACCTGTTGTTGAGAAGGTAACCGGGGGAACTCGTAAGAAAAGACAGAGCCCGAAGGTGCCGAAATCTCCCAAGGCTAAGAAGTCCAAGAGGGGACCACGTGTGCCAAAGAATGAGAATGCTCCCACAGTTCATCGTGCAAGAGTTCCAAAGAAAACTACTGAAATTGTAATAAATGGAATTGACATGGATATTTCAAGTATTCCAATCCCTGTTTGTTCATGCACAGGAGCATCTCAACAGTGTTACAGATGGGGCTCTGGAGGGTGGCAATCTGCATGTTGCACAACAGGCATGTCAGTGTATCCTTTGCCTATGAGTACCAAGCGGCGTGGTGCAAGGATAGCTGGAAGAAAAATGAGTATAGGAGCATTTAAAAAAGTTTTGGAGAAACTTGCTGCTGAGGGTTATAACTTTTCTAATCCTATTGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATTAGGTAG 837 0.4528 MSSIRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGGRNAAVLSGTNGAFHHRDIGMSHATYPMEYTRDAWISSYRDKYMNMIPTNHNYGGIPETSSAHQIQMIPPPELPKEEREVEEEPVVEKVTGGTRKKRQSPKVPKSPKAKKSKRGPRVPKNENAPTVHRARVPKKTTEIVINGIDMDISSIPIPVCSCTGASQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00454 278 SMART GAGA_bind_2 1 278 IPR010409 -
Viun4g00454 278 MobiDBLite consensus disorder prediction 130 149 - -
Viun4g00454 278 Pfam GAGA binding protein-like family 3 278 IPR010409 -
Viun4g00454 278 PANTHER - 3 278 IPR010409 -
Viun4g00454 278 MobiDBLite consensus disorder prediction 106 163 - -
Viun4g00454 278 MobiDBLite consensus disorder prediction 107 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00454 Viun-Chr4 3028233 3033699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00454 4 278 BBR or BPC Transcription factor family AT2G01930 52.069 1.72e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Viun4g00454 GAGA_bind 2.6e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00454 - - gmx:100784091 478.404