Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00453 ATGTCATCCATCCGCAACTGGGGTTACTATGAACCGGCCACATCGTTTAAGAGCCACCTGGGGCTCCAGCTGATGTCATCCATGCCGGAAAAGCCTTTAATCGGAGGGCGCAATGCTGCAGTTTTATCTGGCACAAATGGGGCATTTCACCACAGAGACATTGGTATGTCCCACGCTACATACCCTATGGAATACACGAGGGATGCTTGGATTAGTAGTTACAGAGACAAGTATATGAATATGATACCTACAAATCATAACTATGGTGGTATTCCGGAGACATCTTCGGCACATCAAATTCAAATGATTCCACCGCCGGAGTTGCCGAAGGAAGAAAGGGAAGTGGAAGAGGAACCTGTTGTTGAGAAGGTAACCGGGGGAACTCGTAAGAAAAGACAGAGCCCGAAGGTGCCGAAATCTCCCAAGGCTAAGAAGTCCAAGAGGGGACCACGTGTGCCAAAGAATGAGAATGCTCCCACAGTTCATCGTGCAAGAGTTCCAAAGAAAACTACTGAAATTGTAATAAATGGAATTGACATGGATATTTCAAGTATTCCAATCCCTGTTTGTTCATGCACAGGAGCATCTCAACAGTGTTACAGATGGGGCTCTGGAGGGTGGCAATCTGCATGTTGCACAACAGGCATGTCAGTGTATCCTTTGCCTATGAGTACCAAGCGGCGTGGTGCAAGGATAGCTGGAAGAAAAATGAGTATAGGAGCATTTAAAAAAGTTTTGGAGAAACTTGCTGCTGAGGGTTATAACTTTTCTAATCCTATTGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATTAGATTTGACTCTTCATTGCTGATTGGCTACAGACCCCAAGACCCTCCAATGGTTATATCCAATCCAAGTAGTTCCAGCCACAGTATACTTATCACGCAGGGAAGAAGCTCAACAGCAGTGAGGCAATAA 960 0.4521 MSSIRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGGRNAAVLSGTNGAFHHRDIGMSHATYPMEYTRDAWISSYRDKYMNMIPTNHNYGGIPETSSAHQIQMIPPPELPKEEREVEEEPVVEKVTGGTRKKRQSPKVPKSPKAKKSKRGPRVPKNENAPTVHRARVPKKTTEIVINGIDMDISSIPIPVCSCTGASQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIRFDSSLLIGYRPQDPPMVISNPSSSSHSILITQGRSSTAVRQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00453 319 MobiDBLite consensus disorder prediction 130 149 - -
Viun4g00453 319 Pfam GAGA binding protein-like family 3 278 IPR010409 -
Viun4g00453 319 SMART GAGA_bind_2 1 278 IPR010409 -
Viun4g00453 319 PANTHER - 3 278 IPR010409 -
Viun4g00453 319 MobiDBLite consensus disorder prediction 106 163 - -
Viun4g00453 319 MobiDBLite consensus disorder prediction 298 319 - -
Viun4g00453 319 MobiDBLite consensus disorder prediction 107 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00453 Viun-Chr4 3025310 3033700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00453 4 278 BBR or BPC Transcription factor family AT2G01930 52.069 4.91e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Viun4g00453 GAGA_bind 4.3e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00453 - - gmx:100784091 478.404