Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00442 ATGCCCCAGAATAGCATTTTCCGAGACCAATCATCGAATCAGATTCCTGATCTTTCCCTTCACATTAGCCTCCCAAACAGTGCTCCTTCTTCGATTTGCACTGGAGAGGATTCACCCTTTGATGCATGGCCACACCAAGATGACTATGCAGAAGAAGGCTTCAAATCCCACAGTGATGGTTCAATCAAAGGTTGTAGCCCTTACCACACAGACACACAACTGTCTTTAGCAAACTCCACAACTGTCACTGTTACTCCCTCTGAGGCTGACAGCACCTGGAGGAAGAGAAACTTTGTTAGACTTAGCCACCATGGGGTTTCTGAGGCTCAAATAAGACTCATCAATGGAATCCCTCTCTACAGTAACCTTTCTTCTTTGGACAACAACACTAGTACTGAGAGAAACCCCACCAACAAGTTTTCCTTTTCTTCTCTATATTCACTTCCACACCCTCCTTATTCTTCCAATTCTGCTCCTAACTATACCTATAATGGTGCTGTTGGGGGTGTAGCAGGAGAACCAATCTCAAGGCCCCAACAGTTTCAGCACTTTGATTACCCTCAGCAGCAGCAGTTTGGGAATAGTTCAAATTTTGGAGCTTCTGAATTTTCTAATAATGGATTTGTGAGATCAAGAATGTTGCCAAGGAATCAAAGTAATAAAAGGAACATGAGGGCTCCAAGAATGCGTTGGACTAGTTCTCTTCACAACCGCTTTGTTCATGCTGTTGAACTACTCGGTGGCCATGAAAGGGCTACTCCTAAGTCAGTTTTGGAACTAATGGATGTGAAAGATCTAACACTAGCTCATGTGAAGAGTCATTTGCAGATGTATCGGACTGTTAAGAACACTGACAAACCTGCACCTTCTTCAGATGGGGATGAGGATTTCATGTCCATAACAGTTCCAAATAATCAAAATACGAATTTTTTACCCAATCAGAGAGGAGCTCCAAATGCATCCATGGATCATGATAAGGGCTACACATCCAGCAATCTGTGGGCTAATTCTTCTACCAGTAGAGGAGCACGGATACAAGCTAGTGCACATGATTTGGAAGAACTTAGTCACCACGAAATCCTATCATCTCAGCAATATTCTGGGAAACTTTCTGAGGGAAACAACTACATACAAACAAGAAGCTTCAAGGATCAAAATCCAAGCTTGGAGTTCACCTTAGGGAGATCAACACAAGAATGA 1200 0.4292 MPQNSIFRDQSSNQIPDLSLHISLPNSAPSSICTGEDSPFDAWPHQDDYAEEGFKSHSDGSIKGCSPYHTDTQLSLANSTTVTVTPSEADSTWRKRNFVRLSHHGVSEAQIRLINGIPLYSNLSSLDNNTSTERNPTNKFSFSSLYSLPHPPYSSNSAPNYTYNGAVGGVAGEPISRPQQFQHFDYPQQQQFGNSSNFGASEFSNNGFVRSRMLPRNQSNKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAPSSDGDEDFMSITVPNNQNTNFLPNQRGAPNASMDHDKGYTSSNLWANSSTSRGARIQASAHDLEELSHHEILSSQQYSGKLSEGNNYIQTRSFKDQNPSLEFTLGRSTQE 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00442 399 MobiDBLite consensus disorder prediction 297 316 - -
Viun4g00442 399 MobiDBLite consensus disorder prediction 280 337 - -
Viun4g00442 399 SUPERFAMILY Homeodomain-like 224 281 IPR009057 -
Viun4g00442 399 MobiDBLite consensus disorder prediction 380 399 - -
Viun4g00442 399 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 397 IPR044847 GO:0000976|GO:0006355|GO:0010158
Viun4g00442 399 Gene3D - 226 283 - -
Viun4g00442 399 FunFam Myb family transcription factor 225 283 - -
Viun4g00442 399 Pfam Myb-like DNA-binding domain 228 279 IPR001005 -
Viun4g00442 399 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00442 Viun-Chr4 2977603 2986767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00442 207 395 G2-like Transcription Factor Family AT5G16560 50.746 5.25e-46 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun4g00442 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00442 - - gmx:100814432 560.066